Protein–RNA interactions for Protein: O94782

USP1, Ubiquitin carboxyl-terminal hydrolase 1, humanhuman

Predictions only

Length 785 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP1O94782 AC005837.3-201ENST00000612163 286 ntBASIC21.24■□□□□ 0.99
USP1O94782 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
USP1O94782 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP1O94782 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
USP1O94782 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
USP1O94782 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.23■□□□□ 0.99
USP1O94782 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.23■□□□□ 0.99
USP1O94782 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.23■□□□□ 0.99
USP1O94782 MAG-206ENST00000597035 542 ntTSL 4 BASIC21.23■□□□□ 0.99
USP1O94782 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.23■□□□□ 0.99
USP1O94782 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.23■□□□□ 0.99
USP1O94782 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.22■□□□□ 0.99
USP1O94782 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.22■□□□□ 0.99
USP1O94782 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.22■□□□□ 0.99
USP1O94782 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.22■□□□□ 0.99
USP1O94782 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.22■□□□□ 0.99
USP1O94782 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.22■□□□□ 0.99
USP1O94782 AF213884.3-201ENST00000563833 479 ntBASIC21.22■□□□□ 0.99
USP1O94782 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.22■□□□□ 0.99
USP1O94782 RASA4CP-201ENST00000424092 1398 ntBASIC21.22■□□□□ 0.99
USP1O94782 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
USP1O94782 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC21.22■□□□□ 0.99
USP1O94782 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
USP1O94782 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
USP1O94782 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 MIR939-201ENST00000401314 82 ntBASIC21.21■□□□□ 0.99
USP1O94782 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.21■□□□□ 0.99
USP1O94782 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 AC005224.4-201ENST00000583262 1652 ntBASIC21.21■□□□□ 0.99
USP1O94782 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.21■□□□□ 0.99
USP1O94782 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
USP1O94782 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
USP1O94782 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.2■□□□□ 0.99
USP1O94782 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.2■□□□□ 0.99
USP1O94782 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
USP1O94782 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
USP1O94782 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 STX5-203ENST00000394690 1568 ntTSL 5 BASIC21.2■□□□□ 0.98
USP1O94782 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.2■□□□□ 0.98
USP1O94782 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
USP1O94782 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
USP1O94782 MIR572-201ENST00000384983 95 ntBASIC21.2■□□□□ 0.98
USP1O94782 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.2■□□□□ 0.98
USP1O94782 AL031432.3-201ENST00000607698 485 ntBASIC21.2■□□□□ 0.98
USP1O94782 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.2■□□□□ 0.98
USP1O94782 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 AC092667.1-201ENST00000434301 2586 ntBASIC21.2■□□□□ 0.98
USP1O94782 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
USP1O94782 BX005040.4-201ENST00000637145 1518 ntBASIC21.19■□□□□ 0.98
USP1O94782 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.19■□□□□ 0.98
USP1O94782 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC21.19■□□□□ 0.98
USP1O94782 MIR935-201ENST00000401179 91 ntBASIC21.19■□□□□ 0.98
USP1O94782 AC091305.1-201ENST00000479476 895 ntBASIC21.19■□□□□ 0.98
USP1O94782 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.19■□□□□ 0.98
USP1O94782 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC21.19■□□□□ 0.98
USP1O94782 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
USP1O94782 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
USP1O94782 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
USP1O94782 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
USP1O94782 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
USP1O94782 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.18■□□□□ 0.98
USP1O94782 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
USP1O94782 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms