Protein–RNA interactions for Protein: O60260

PRKN, E3 ubiquitin-protein ligase parkin, humanhuman

Predicted RBP Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKNO60260 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.59■□□□□ 0.73
PRKNO60260 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.59■□□□□ 0.73
PRKNO60260 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
PRKNO60260 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.59■□□□□ 0.73
PRKNO60260 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
PRKNO60260 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
PRKNO60260 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
PRKNO60260 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.73
PRKNO60260 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.58■□□□□ 0.73
PRKNO60260 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
PRKNO60260 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.58■□□□□ 0.72
PRKNO60260 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC19.58■□□□□ 0.72
PRKNO60260 SLC7A5P2-201ENST00000553010 536 ntBASIC19.58■□□□□ 0.72
PRKNO60260 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.58■□□□□ 0.72
PRKNO60260 AC080038.1-201ENST00000611274 1154 ntBASIC19.58■□□□□ 0.72
PRKNO60260 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC19.58■□□□□ 0.72
PRKNO60260 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
PRKNO60260 ARRB2-201ENST00000269260 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
PRKNO60260 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC19.58■□□□□ 0.72
PRKNO60260 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.57■□□□□ 0.72
PRKNO60260 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC19.57■□□□□ 0.72
PRKNO60260 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.57■□□□□ 0.72
PRKNO60260 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.57■□□□□ 0.72
PRKNO60260 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
PRKNO60260 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.57■□□□□ 0.72
PRKNO60260 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.57■□□□□ 0.72
PRKNO60260 AC090192.1-201ENST00000517740 490 ntBASIC19.57■□□□□ 0.72
PRKNO60260 MFSD11-216ENST00000590393 1141 ntBASIC19.57■□□□□ 0.72
PRKNO60260 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 BID-214ENST00000617586 542 ntTSL 5 BASIC19.57■□□□□ 0.72
PRKNO60260 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.57■□□□□ 0.72
PRKNO60260 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
PRKNO60260 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
PRKNO60260 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.56■□□□□ 0.72
PRKNO60260 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PRKNO60260 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 BID-212ENST00000614949 1988 ntTSL 5 BASIC19.56■□□□□ 0.72
PRKNO60260 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
PRKNO60260 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.56■□□□□ 0.72
PRKNO60260 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.56■□□□□ 0.72
PRKNO60260 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.56■□□□□ 0.72
PRKNO60260 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.56■□□□□ 0.72
PRKNO60260 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
PRKNO60260 AC061975.6-201ENST00000579045 1553 ntBASIC19.56■□□□□ 0.72
PRKNO60260 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
PRKNO60260 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
PRKNO60260 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC19.55■□□□□ 0.72
PRKNO60260 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC19.55■□□□□ 0.72
PRKNO60260 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC19.55■□□□□ 0.72
PRKNO60260 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.55■□□□□ 0.72
PRKNO60260 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 KRT18P11-201ENST00000435214 1283 ntBASIC19.55■□□□□ 0.72
PRKNO60260 CDCA4P2-201ENST00000441182 718 ntBASIC19.55■□□□□ 0.72
PRKNO60260 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.55■□□□□ 0.72
PRKNO60260 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.55■□□□□ 0.72
PRKNO60260 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.55■□□□□ 0.72
PRKNO60260 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.55■□□□□ 0.72
PRKNO60260 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.55■□□□□ 0.72
PRKNO60260 AC073111.5-205ENST00000641717 521 ntBASIC19.55■□□□□ 0.72
PRKNO60260 MYCNOS-205ENST00000641950 531 ntBASIC19.55■□□□□ 0.72
PRKNO60260 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PRKNO60260 GAS2L1P2-201ENST00000436355 1356 ntBASIC19.55■□□□□ 0.72
PRKNO60260 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
PRKNO60260 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PRKNO60260 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 21.5 ms