Protein–RNA interactions for Protein: O43175

PHGDH, D-3-phosphoglycerate dehydrogenase, humanhuman

Known RBP Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PHGDHO43175 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.9■□□□□ 0.94
PHGDHO43175 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.9■□□□□ 0.94
PHGDHO43175 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC20.9■□□□□ 0.94
PHGDHO43175 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC20.9■□□□□ 0.94
PHGDHO43175 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PHGDHO43175 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
PHGDHO43175 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PHGDHO43175 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PHGDHO43175 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PHGDHO43175 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.9■□□□□ 0.94
PHGDHO43175 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.9■□□□□ 0.94
PHGDHO43175 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
PHGDHO43175 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PHGDHO43175 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PHGDHO43175 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PHGDHO43175 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
PHGDHO43175 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.89■□□□□ 0.93
PHGDHO43175 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC20.89■□□□□ 0.93
PHGDHO43175 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC20.89■□□□□ 0.93
PHGDHO43175 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.89■□□□□ 0.93
PHGDHO43175 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC20.89■□□□□ 0.93
PHGDHO43175 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PHGDHO43175 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
PHGDHO43175 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 AC073130.3-201ENST00000624389 2278 ntBASIC20.88■□□□□ 0.93
PHGDHO43175 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC20.88■□□□□ 0.93
PHGDHO43175 AP001330.3-201ENST00000520123 633 ntBASIC20.88■□□□□ 0.93
PHGDHO43175 AC027682.1-201ENST00000562846 899 ntBASIC20.88■□□□□ 0.93
PHGDHO43175 MPST-208ENST00000628507 698 ntTSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 AC105233.4-201ENST00000642045 216 ntBASIC20.88■□□□□ 0.93
PHGDHO43175 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC20.88■□□□□ 0.93
PHGDHO43175 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PHGDHO43175 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PHGDHO43175 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC20.88■□□□□ 0.93
PHGDHO43175 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PHGDHO43175 AC055733.4-201ENST00000638462 1354 ntBASIC20.87■□□□□ 0.93
PHGDHO43175 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
PHGDHO43175 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PHGDHO43175 LHPP-203ENST00000392757 840 ntTSL 3 BASIC20.87■□□□□ 0.93
PHGDHO43175 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC20.87■□□□□ 0.93
PHGDHO43175 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
PHGDHO43175 AC106739.1-201ENST00000617035 715 ntBASIC20.87■□□□□ 0.93
PHGDHO43175 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.87■□□□□ 0.93
PHGDHO43175 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PHGDHO43175 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.87■□□□□ 0.93
PHGDHO43175 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
PHGDHO43175 AC009237.3-201ENST00000393279 1427 ntBASIC20.87■□□□□ 0.93
PHGDHO43175 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PHGDHO43175 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.87■□□□□ 0.93
PHGDHO43175 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
PHGDHO43175 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC20.86■□□□□ 0.93
PHGDHO43175 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
PHGDHO43175 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC20.86■□□□□ 0.93
PHGDHO43175 AC110285.6-201ENST00000617652 491 ntBASIC20.86■□□□□ 0.93
PHGDHO43175 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.86■□□□□ 0.93
PHGDHO43175 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PHGDHO43175 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.86■□□□□ 0.93
PHGDHO43175 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.86■□□□□ 0.93
PHGDHO43175 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
PHGDHO43175 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.85■□□□□ 0.93
PHGDHO43175 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC20.85■□□□□ 0.93
PHGDHO43175 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC20.85■□□□□ 0.93
PHGDHO43175 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.85■□□□□ 0.93
PHGDHO43175 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.85■□□□□ 0.93
PHGDHO43175 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PHGDHO43175 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PHGDHO43175 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.6 ms