Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AC068473.5-201ENST00000616428 2072 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AC061975.6-201ENST00000579045 1553 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 GPX1P1-201ENST00000388829 606 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AC007322.4-201ENST00000509611 723 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AL121832.2-201ENST00000610979 668 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AL109923.1-201ENST00000618799 583 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 AC010542.4-201ENST00000563151 1910 ntBASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.6
CLCF1Q9UBD9 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 APTR-203ENST00000430801 583 ntTSL 5 BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC18.77■□□□□ 0.6
CLCF1Q9UBD9 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
CLCF1Q9UBD9 GUSBP5-202ENST00000510805 1989 ntBASIC18.77■□□□□ 0.59
CLCF1Q9UBD9 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 AC233723.2-201ENST00000623798 2106 ntBASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 BMP1-204ENST00000397814 836 ntTSL 4 BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
CLCF1Q9UBD9 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 METTL15-202ENST00000403099 795 ntTSL 5 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 EMC9-206ENST00000560403 872 ntTSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC18.75■□□□□ 0.59
CLCF1Q9UBD9 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 AC083906.2-201ENST00000511578 360 ntBASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 DENND3-207ENST00000518347 850 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 OAS3-207ENST00000551007 998 ntTSL 2 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 AC068338.2-201ENST00000563278 1430 ntBASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
CLCF1Q9UBD9 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
CLCF1Q9UBD9 CYP2T1P-201ENST00000432607 1285 ntBASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 62.6 ms