Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC006455.2-201ENST00000429931 906 ntBASIC19.16■□□□□ 0.66
DDX28Q9NUL7 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 AL512631.2-201ENST00000604634 923 ntBASIC19.16■□□□□ 0.66
DDX28Q9NUL7 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 SMAD4-201ENST00000342988 8769 ntAPPRIS P1 TSL 5 BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 QDPR-206ENST00000508623 601 ntTSL 3 BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 AC099791.2-201ENST00000605725 427 ntBASIC19.15■□□□□ 0.66
DDX28Q9NUL7 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 AC133637.1-201ENST00000624115 1537 ntBASIC19.15■□□□□ 0.66
DDX28Q9NUL7 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
DDX28Q9NUL7 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
DDX28Q9NUL7 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.66
DDX28Q9NUL7 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 SRD5A1P1-201ENST00000442297 786 ntBASIC19.14■□□□□ 0.65
DDX28Q9NUL7 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 pRNA.6-201ENST00000610482 90 ntBASIC19.14■□□□□ 0.65
DDX28Q9NUL7 pRNA.5-201ENST00000612139 90 ntBASIC19.14■□□□□ 0.65
DDX28Q9NUL7 pRNA.11-201ENST00000618423 90 ntBASIC19.14■□□□□ 0.65
DDX28Q9NUL7 pRNA.13-201ENST00000619112 90 ntBASIC19.14■□□□□ 0.65
DDX28Q9NUL7 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 WWC1-201ENST00000265293 7130 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 FRRS1L-201ENST00000561981 8197 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
DDX28Q9NUL7 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 AC092171.4-201ENST00000609130 632 ntBASIC19.13■□□□□ 0.65
DDX28Q9NUL7 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 SCARF2-202ENST00000622235 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
DDX28Q9NUL7 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 TCIRG1-213ENST00000532635 2457 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
DDX28Q9NUL7 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 TMEM214-203ENST00000404032 2830 ntTSL 2 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 FAM117B-201ENST00000392238 5763 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
DDX28Q9NUL7 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
DDX28Q9NUL7 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms