Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 OR2A1-AS1-201ENST00000462305 773 ntBASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 UNC93B5-201ENST00000530315 699 ntBASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 AP006294.2-201ENST00000641667 209 ntBASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC23.58■■□□□ 1.36
UPF3AQ9H1J1 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.36
UPF3AQ9H1J1 GATA3-AS1-201ENST00000355358 2214 ntTSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PRSS56-201ENST00000449534 2157 ntAPPRIS ALT2 TSL 5 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PRSS56-203ENST00000617714 2158 ntAPPRIS P2 TSL 5 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC23.57■■□□□ 1.36
UPF3AQ9H1J1 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 SYNE2-201ENST00000341472 1132 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 CCDC107-206ENST00000426546 1242 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 AC026366.1-201ENST00000488803 879 ntBASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
UPF3AQ9H1J1 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 SERPINH1P1-201ENST00000419794 1249 ntBASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC23.55■■□□□ 1.36
UPF3AQ9H1J1 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 AC142381.4-202ENST00000563973 229 ntBASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.54■■□□□ 1.36
UPF3AQ9H1J1 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 LSM12P1-201ENST00000411836 588 ntBASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 AL158047.1-201ENST00000445918 881 ntBASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 NDUFB2-203ENST00000461457 559 ntTSL 3 BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 ARL16-209ENST00000573715 763 ntTSL 3 BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 ARL16-211ENST00000576135 694 ntTSL 3 BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 MAGIX-206ENST00000615626 1057 ntTSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC23.53■■□□□ 1.36
UPF3AQ9H1J1 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 PURG-202ENST00000475541 2875 ntAPPRIS P1 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 SLC35A2-202ENST00000376512 903 ntTSL 2 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 NCBP2-207ENST00000452404 1133 ntTSL 2 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 AP003097.1-201ENST00000530657 1135 ntBASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 FAM21FP-204ENST00000608637 956 ntBASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC23.52■■□□□ 1.36
UPF3AQ9H1J1 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC23.51■■□□□ 1.35
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms