Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 DHDH-203ENST00000522614 776 ntTSL 5 BASIC18.65■□□□□ 0.58
COL12A1Q99715 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.65■□□□□ 0.58
COL12A1Q99715 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL12A1Q99715 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC18.65■□□□□ 0.58
COL12A1Q99715 REPIN1-210ENST00000482680 1029 ntTSL 2 BASIC18.65■□□□□ 0.58
COL12A1Q99715 SLC29A4P2-201ENST00000504749 1089 ntBASIC18.65■□□□□ 0.58
COL12A1Q99715 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 TPM4P1-201ENST00000436100 807 ntBASIC18.65■□□□□ 0.58
COL12A1Q99715 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC18.65■□□□□ 0.58
COL12A1Q99715 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL12A1Q99715 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL12A1Q99715 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
COL12A1Q99715 HES2-205ENST00000487437 968 ntTSL 3 BASIC18.64■□□□□ 0.57
COL12A1Q99715 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.64■□□□□ 0.57
COL12A1Q99715 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC18.64■□□□□ 0.57
COL12A1Q99715 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL12A1Q99715 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
COL12A1Q99715 NTSR2-201ENST00000306928 1569 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL12A1Q99715 RMI2-205ENST00000576027 818 ntTSL 2 BASIC18.64■□□□□ 0.57
COL12A1Q99715 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL12A1Q99715 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
COL12A1Q99715 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
COL12A1Q99715 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC18.63■□□□□ 0.57
COL12A1Q99715 NTAN1-201ENST00000287706 1204 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC18.63■□□□□ 0.57
COL12A1Q99715 PNMA6B-201ENST00000538162 1200 ntBASIC18.63■□□□□ 0.57
COL12A1Q99715 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 TK2-204ENST00000525974 1178 ntTSL 2 BASIC18.63■□□□□ 0.57
COL12A1Q99715 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.63■□□□□ 0.57
COL12A1Q99715 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC18.63■□□□□ 0.57
COL12A1Q99715 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 ABCB10P4-201ENST00000566803 2184 ntBASIC18.63■□□□□ 0.57
COL12A1Q99715 AC145676.1-201ENST00000514988 2004 ntBASIC18.63■□□□□ 0.57
COL12A1Q99715 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 ISG20-202ENST00000379224 540 ntTSL 3 BASIC18.63■□□□□ 0.57
COL12A1Q99715 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
COL12A1Q99715 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL12A1Q99715 CNOT8-224ENST00000523698 862 ntTSL 2 BASIC18.62■□□□□ 0.57
COL12A1Q99715 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.62■□□□□ 0.57
COL12A1Q99715 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC18.62■□□□□ 0.57
COL12A1Q99715 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC18.62■□□□□ 0.57
COL12A1Q99715 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL12A1Q99715 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC18.62■□□□□ 0.57
COL12A1Q99715 AL355472.2-201ENST00000422958 438 ntBASIC18.62■□□□□ 0.57
COL12A1Q99715 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.62■□□□□ 0.57
COL12A1Q99715 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC18.62■□□□□ 0.57
COL12A1Q99715 AL591742.1-201ENST00000604433 565 ntBASIC18.62■□□□□ 0.57
COL12A1Q99715 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL12A1Q99715 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.61■□□□□ 0.57
COL12A1Q99715 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.61■□□□□ 0.57
COL12A1Q99715 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.61■□□□□ 0.57
COL12A1Q99715 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC18.61■□□□□ 0.57
COL12A1Q99715 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL12A1Q99715 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL12A1Q99715 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.61■□□□□ 0.57
COL12A1Q99715 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC18.61■□□□□ 0.57
COL12A1Q99715 AC060766.5-201ENST00000590539 871 ntBASIC18.61■□□□□ 0.57
COL12A1Q99715 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL12A1Q99715 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.61■□□□□ 0.57
COL12A1Q99715 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC18.61■□□□□ 0.57
COL12A1Q99715 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL12A1Q99715 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
COL12A1Q99715 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC18.6■□□□□ 0.57
COL12A1Q99715 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC18.6■□□□□ 0.57
COL12A1Q99715 KLF2-202ENST00000592003 564 ntTSL 3 BASIC18.6■□□□□ 0.57
COL12A1Q99715 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.6■□□□□ 0.57
COL12A1Q99715 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC18.6■□□□□ 0.57
COL12A1Q99715 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
COL12A1Q99715 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 AP003071.4-201ENST00000562276 1284 ntBASIC18.6■□□□□ 0.57
COL12A1Q99715 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC18.6■□□□□ 0.57
COL12A1Q99715 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC18.6■□□□□ 0.57
COL12A1Q99715 NAPRT-204ENST00000449291 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL12A1Q99715 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC18.6■□□□□ 0.57
COL12A1Q99715 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms