Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
CFAP54Q96N23 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 AL353803.4-201ENST00000565882 1934 ntBASIC20.88■□□□□ 0.93
CFAP54Q96N23 KRT17P3-201ENST00000420566 1262 ntBASIC20.88■□□□□ 0.93
CFAP54Q96N23 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC20.88■□□□□ 0.93
CFAP54Q96N23 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CFAP54Q96N23 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
CFAP54Q96N23 KREMEN2-205ENST00000575769 1922 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
CFAP54Q96N23 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC20.87■□□□□ 0.93
CFAP54Q96N23 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC20.87■□□□□ 0.93
CFAP54Q96N23 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC20.87■□□□□ 0.93
CFAP54Q96N23 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
CFAP54Q96N23 AKT1-201ENST00000349310 2866 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CFAP54Q96N23 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC20.87■□□□□ 0.93
CFAP54Q96N23 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
CFAP54Q96N23 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.86■□□□□ 0.93
CFAP54Q96N23 AC090877.2-202ENST00000560363 574 ntTSL 2 BASIC20.86■□□□□ 0.93
CFAP54Q96N23 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC20.86■□□□□ 0.93
CFAP54Q96N23 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.86■□□□□ 0.93
CFAP54Q96N23 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 HLA-B-256ENST00000639848 1089 ntBASIC20.86■□□□□ 0.93
CFAP54Q96N23 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
CFAP54Q96N23 UPK3BP1-201ENST00000428678 509 ntBASIC20.86■□□□□ 0.93
CFAP54Q96N23 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.86■□□□□ 0.93
CFAP54Q96N23 AL161729.1-201ENST00000604104 1402 ntBASIC20.85■□□□□ 0.93
CFAP54Q96N23 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC20.85■□□□□ 0.93
CFAP54Q96N23 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
CFAP54Q96N23 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 AC060766.5-201ENST00000590539 871 ntBASIC20.84■□□□□ 0.93
CFAP54Q96N23 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
CFAP54Q96N23 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 NTF6B-201ENST00000591913 560 ntBASIC20.84■□□□□ 0.93
CFAP54Q96N23 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
CFAP54Q96N23 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CFAP54Q96N23 OXCT2P1-201ENST00000447263 1535 ntBASIC20.83■□□□□ 0.93
CFAP54Q96N23 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CFAP54Q96N23 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.83■□□□□ 0.93
CFAP54Q96N23 GOLGA7-201ENST00000357743 2027 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
CFAP54Q96N23 ISG20-202ENST00000379224 540 ntTSL 3 BASIC20.83■□□□□ 0.93
CFAP54Q96N23 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
CFAP54Q96N23 KRT126P-201ENST00000549467 1181 ntBASIC20.83■□□□□ 0.93
CFAP54Q96N23 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.92
CFAP54Q96N23 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CFAP54Q96N23 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.83■□□□□ 0.92
CFAP54Q96N23 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC20.83■□□□□ 0.92
CFAP54Q96N23 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
CFAP54Q96N23 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.82■□□□□ 0.92
CFAP54Q96N23 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 ICAM4-201ENST00000340992 1176 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 AC026396.1-201ENST00000419388 421 ntBASIC20.82■□□□□ 0.92
CFAP54Q96N23 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC20.82■□□□□ 0.92
CFAP54Q96N23 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.82■□□□□ 0.92
CFAP54Q96N23 KRT17P1-201ENST00000399211 1546 ntBASIC20.82■□□□□ 0.92
CFAP54Q96N23 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 AC079630.1-202ENST00000618127 1840 ntBASIC20.82■□□□□ 0.92
CFAP54Q96N23 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 AP001412.1-201ENST00000608405 714 ntBASIC20.82■□□□□ 0.92
CFAP54Q96N23 THRA-202ENST00000394121 2260 ntTSL 2 BASIC20.82■□□□□ 0.92
CFAP54Q96N23 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
CFAP54Q96N23 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.82■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms