Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC25.84■■□□□ 1.73
USP48Q86UV5 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC25.84■■□□□ 1.73
USP48Q86UV5 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC25.84■■□□□ 1.73
USP48Q86UV5 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC25.84■■□□□ 1.73
USP48Q86UV5 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC25.84■■□□□ 1.73
USP48Q86UV5 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC25.83■■□□□ 1.73
USP48Q86UV5 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC25.83■■□□□ 1.73
USP48Q86UV5 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC25.83■■□□□ 1.73
USP48Q86UV5 MIPEPP3-201ENST00000412105 444 ntBASIC25.83■■□□□ 1.73
USP48Q86UV5 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC25.83■■□□□ 1.73
USP48Q86UV5 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC25.83■■□□□ 1.73
USP48Q86UV5 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC25.83■■□□□ 1.72
USP48Q86UV5 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC25.83■■□□□ 1.72
USP48Q86UV5 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.82■■□□□ 1.72
USP48Q86UV5 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.82■■□□□ 1.72
USP48Q86UV5 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC25.82■■□□□ 1.72
USP48Q86UV5 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC25.81■■□□□ 1.72
USP48Q86UV5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
USP48Q86UV5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC25.81■■□□□ 1.72
USP48Q86UV5 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP48Q86UV5 AL353803.4-201ENST00000565882 1934 ntBASIC25.81■■□□□ 1.72
USP48Q86UV5 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP48Q86UV5 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC25.81■■□□□ 1.72
USP48Q86UV5 PPP1R14BP2-201ENST00000426284 444 ntBASIC25.81■■□□□ 1.72
USP48Q86UV5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC25.81■■□□□ 1.72
USP48Q86UV5 SLC7A5P1-201ENST00000568957 537 ntBASIC25.81■■□□□ 1.72
USP48Q86UV5 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC25.81■■□□□ 1.72
USP48Q86UV5 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 GRIN2D-201ENST00000263269 5093 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 DUSP5P2-201ENST00000426873 1033 ntBASIC25.8■■□□□ 1.72
USP48Q86UV5 AC098590.1-201ENST00000468126 897 ntBASIC25.8■■□□□ 1.72
USP48Q86UV5 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC25.8■■□□□ 1.72
USP48Q86UV5 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC25.8■■□□□ 1.72
USP48Q86UV5 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 USP48-205ENST00000421625 2818 ntTSL 2 BASIC25.8■■□□□ 1.72
USP48Q86UV5 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.8■■□□□ 1.72
USP48Q86UV5 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC25.8■■□□□ 1.72
USP48Q86UV5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP48Q86UV5 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP48Q86UV5 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP48Q86UV5 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP48Q86UV5 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
USP48Q86UV5 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC25.79■■□□□ 1.72
USP48Q86UV5 MARS-234ENST00000630571 216 ntTSL 5 BASIC25.79■■□□□ 1.72
USP48Q86UV5 MARS-235ENST00000630803 183 ntTSL 3 BASIC25.79■■□□□ 1.72
USP48Q86UV5 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC25.79■■□□□ 1.72
USP48Q86UV5 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC25.79■■□□□ 1.72
USP48Q86UV5 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC25.79■■□□□ 1.72
USP48Q86UV5 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC25.79■■□□□ 1.72
USP48Q86UV5 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC25.79■■□□□ 1.72
USP48Q86UV5 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP48Q86UV5 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.78■■□□□ 1.72
USP48Q86UV5 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC25.78■■□□□ 1.72
USP48Q86UV5 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC25.78■■□□□ 1.72
USP48Q86UV5 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP48Q86UV5 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC25.78■■□□□ 1.72
USP48Q86UV5 BMP1-204ENST00000397814 836 ntTSL 4 BASIC25.78■■□□□ 1.72
USP48Q86UV5 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC25.78■■□□□ 1.72
USP48Q86UV5 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.78■■□□□ 1.72
USP48Q86UV5 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC25.78■■□□□ 1.72
USP48Q86UV5 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC25.78■■□□□ 1.72
USP48Q86UV5 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
USP48Q86UV5 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC25.77■■□□□ 1.72
USP48Q86UV5 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC25.77■■□□□ 1.72
USP48Q86UV5 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC25.77■■□□□ 1.72
USP48Q86UV5 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC25.77■■□□□ 1.72
USP48Q86UV5 RHEB-204ENST00000472642 900 ntTSL 3 BASIC25.77■■□□□ 1.72
USP48Q86UV5 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC25.77■■□□□ 1.72
USP48Q86UV5 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.77■■□□□ 1.72
USP48Q86UV5 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.72
USP48Q86UV5 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 UQCRFS1P1-201ENST00000435169 820 ntBASIC25.76■■□□□ 1.71
USP48Q86UV5 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC25.76■■□□□ 1.71
USP48Q86UV5 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC25.76■■□□□ 1.71
USP48Q86UV5 PHB2-213ENST00000546111 858 ntTSL 2 BASIC25.76■■□□□ 1.71
USP48Q86UV5 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC25.76■■□□□ 1.71
USP48Q86UV5 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC25.76■■□□□ 1.71
USP48Q86UV5 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC25.76■■□□□ 1.71
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms