Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 AC079140.4-201ENST00000507448 529 ntBASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 UPF3A-202ENST00000375299 2387 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
TRIM40Q6P9F5 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
TRIM40Q6P9F5 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 MFF-207ENST00000409565 1548 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
TRIM40Q6P9F5 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
TRIM40Q6P9F5 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 CCDC92B-201ENST00000575506 885 ntBASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 TERF1P2-201ENST00000583350 1212 ntBASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
TRIM40Q6P9F5 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 KRT18P14-201ENST00000534205 1250 ntBASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 KRT87P-202ENST00000534226 1464 ntBASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
TRIM40Q6P9F5 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 PALM-208ENST00000592155 2272 ntTSL 4 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
TRIM40Q6P9F5 MFF-203ENST00000349901 1716 ntTSL 2 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 87.1 ms