Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 AC006455.2-201ENST00000429931 906 ntBASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 AC241377.3-202ENST00000626088 1088 ntBASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 AC241585.3-202ENST00000628937 1088 ntBASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 AC245100.8-202ENST00000629247 1058 ntBASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 AC090360.1-201ENST00000569722 2218 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC20.1■□□□□ 0.81
PPP4R4Q6NUP7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 FP325331.1-202ENST00000623531 1380 ntBASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 FBXO41-205ENST00000521871 7336 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 DUX4L19-201ENST00000557448 1267 ntBASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
PPP4R4Q6NUP7 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.08■□□□□ 0.81
PPP4R4Q6NUP7 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
PPP4R4Q6NUP7 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PPP4R4Q6NUP7 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
PPP4R4Q6NUP7 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 AC135279.3-201ENST00000610945 1311 ntBASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 SH2B1-202ENST00000337120 6043 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
PPP4R4Q6NUP7 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 AC024257.2-201ENST00000549699 147 ntBASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 TGFBR3L-202ENST00000565886 1260 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
PPP4R4Q6NUP7 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 SERBP1P1-201ENST00000396021 1160 ntBASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 pRNA.6-201ENST00000610482 90 ntBASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 pRNA.5-201ENST00000612139 90 ntBASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 pRNA.11-201ENST00000618423 90 ntBASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 pRNA.13-201ENST00000619112 90 ntBASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC20.05■□□□□ 0.8
PPP4R4Q6NUP7 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 16.5 ms