Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 AF106564.1-201ENST00000607058 2553 ntBASIC24.45■■□□□ 1.5
KRT40Q6A162 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC24.44■■□□□ 1.5
KRT40Q6A162 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 NME4-202ENST00000382940 766 ntTSL 3 BASIC24.44■■□□□ 1.5
KRT40Q6A162 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.44■■□□□ 1.5
KRT40Q6A162 NME4-211ENST00000620944 1193 ntTSL 2 BASIC24.44■■□□□ 1.5
KRT40Q6A162 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC24.44■■□□□ 1.5
KRT40Q6A162 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
KRT40Q6A162 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC24.43■■□□□ 1.5
KRT40Q6A162 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC24.43■■□□□ 1.5
KRT40Q6A162 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC24.43■■□□□ 1.5
KRT40Q6A162 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC24.43■■□□□ 1.5
KRT40Q6A162 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC24.43■■□□□ 1.5
KRT40Q6A162 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
KRT40Q6A162 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC24.42■■□□□ 1.5
KRT40Q6A162 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
KRT40Q6A162 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
KRT40Q6A162 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
KRT40Q6A162 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC24.42■■□□□ 1.5
KRT40Q6A162 GXYLT1P2-201ENST00000433312 1230 ntBASIC24.42■■□□□ 1.5
KRT40Q6A162 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
KRT40Q6A162 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.42■■□□□ 1.5
KRT40Q6A162 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
KRT40Q6A162 AL024507.2-201ENST00000606070 2574 ntBASIC24.42■■□□□ 1.5
KRT40Q6A162 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
KRT40Q6A162 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC24.41■■□□□ 1.5
KRT40Q6A162 USP48-205ENST00000421625 2818 ntTSL 2 BASIC24.41■■□□□ 1.5
KRT40Q6A162 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.41■■□□□ 1.5
KRT40Q6A162 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
KRT40Q6A162 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
KRT40Q6A162 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
KRT40Q6A162 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC24.41■■□□□ 1.5
KRT40Q6A162 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC24.41■■□□□ 1.5
KRT40Q6A162 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC24.41■■□□□ 1.5
KRT40Q6A162 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
KRT40Q6A162 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
KRT40Q6A162 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
KRT40Q6A162 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC24.4■■□□□ 1.5
KRT40Q6A162 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.4■■□□□ 1.5
KRT40Q6A162 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC24.4■■□□□ 1.5
KRT40Q6A162 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC24.4■■□□□ 1.5
KRT40Q6A162 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC24.4■■□□□ 1.5
KRT40Q6A162 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC24.4■■□□□ 1.5
KRT40Q6A162 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC24.39■■□□□ 1.5
KRT40Q6A162 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC24.39■■□□□ 1.5
KRT40Q6A162 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC24.39■■□□□ 1.5
KRT40Q6A162 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.39■■□□□ 1.5
KRT40Q6A162 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC24.39■■□□□ 1.49
KRT40Q6A162 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC24.39■■□□□ 1.49
KRT40Q6A162 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC24.39■■□□□ 1.49
KRT40Q6A162 FXN-202ENST00000396364 980 ntTSL 5 BASIC24.39■■□□□ 1.49
KRT40Q6A162 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.38■■□□□ 1.49
KRT40Q6A162 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.38■■□□□ 1.49
KRT40Q6A162 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC24.38■■□□□ 1.49
KRT40Q6A162 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC24.38■■□□□ 1.49
KRT40Q6A162 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC24.38■■□□□ 1.49
KRT40Q6A162 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC24.38■■□□□ 1.49
KRT40Q6A162 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.38■■□□□ 1.49
KRT40Q6A162 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC24.38■■□□□ 1.49
KRT40Q6A162 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC24.38■■□□□ 1.49
KRT40Q6A162 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC24.37■■□□□ 1.49
KRT40Q6A162 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.37■■□□□ 1.49
KRT40Q6A162 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC24.37■■□□□ 1.49
KRT40Q6A162 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC24.37■■□□□ 1.49
KRT40Q6A162 AC027612.3-201ENST00000413684 1047 ntBASIC24.37■■□□□ 1.49
KRT40Q6A162 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC24.37■■□□□ 1.49
KRT40Q6A162 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.37■■□□□ 1.49
KRT40Q6A162 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC24.37■■□□□ 1.49
KRT40Q6A162 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC24.36■■□□□ 1.49
KRT40Q6A162 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
KRT40Q6A162 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC24.36■■□□□ 1.49
KRT40Q6A162 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.36■■□□□ 1.49
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms