Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 C9orf163-202ENST00000624034 2573 ntBASIC20.22■□□□□ 0.83
COL28A1Q2UY09 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 MRPL15-201ENST00000260102 1147 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 LINC01023-201ENST00000606054 436 ntBASIC20.22■□□□□ 0.83
COL28A1Q2UY09 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 AC073648.6-201ENST00000641589 218 ntBASIC20.22■□□□□ 0.83
COL28A1Q2UY09 AC068587.7-201ENST00000641602 218 ntBASIC20.22■□□□□ 0.83
COL28A1Q2UY09 ME2-208ENST00000638937 2471 ntTSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 TRIM3-201ENST00000345851 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
COL28A1Q2UY09 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 AC010141.3-201ENST00000456659 717 ntBASIC20.21■□□□□ 0.83
COL28A1Q2UY09 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 MIR4497-201ENST00000583208 89 ntBASIC20.21■□□□□ 0.83
COL28A1Q2UY09 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL28A1Q2UY09 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 MIR718-201ENST00000390190 70 ntBASIC20.2■□□□□ 0.82
COL28A1Q2UY09 BX276092.2-201ENST00000417668 665 ntBASIC20.2■□□□□ 0.82
COL28A1Q2UY09 AL390719.1-201ENST00000427998 977 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 CTBP1-AS2-203ENST00000507044 739 ntTSL 3 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL28A1Q2UY09 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC093787.1-201ENST00000450396 207 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC013268.1-206ENST00000638368 961 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC112229.1-201ENST00000639295 961 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 MYC-209ENST00000641252 345 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC004687.1-201ENST00000579003 1625 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC005224.4-201ENST00000583262 1652 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COL28A1Q2UY09 AC068338.2-201ENST00000563278 1430 ntBASIC20.19■□□□□ 0.82
COL28A1Q2UY09 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC20.18■□□□□ 0.82
COL28A1Q2UY09 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms