Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC19.53■□□□□ 0.72
RNF4P78317 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF4P78317 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC19.53■□□□□ 0.72
RNF4P78317 DLX3-202ENST00000512495 834 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF4P78317 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 TFG-210ENST00000620299 1289 ntTSL 5 BASIC19.53■□□□□ 0.72
RNF4P78317 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.53■□□□□ 0.72
RNF4P78317 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
RNF4P78317 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC19.53■□□□□ 0.72
RNF4P78317 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF4P78317 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF4P78317 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.52■□□□□ 0.72
RNF4P78317 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
RNF4P78317 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.52■□□□□ 0.72
RNF4P78317 SLC7A5P2-201ENST00000553010 536 ntBASIC19.52■□□□□ 0.72
RNF4P78317 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF4P78317 VPS53-216ENST00000574029 585 ntTSL 4 BASIC19.52■□□□□ 0.72
RNF4P78317 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC19.52■□□□□ 0.72
RNF4P78317 AC120498.10-201ENST00000621827 505 ntBASIC19.52■□□□□ 0.72
RNF4P78317 MYCNOS-205ENST00000641950 531 ntBASIC19.52■□□□□ 0.72
RNF4P78317 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
RNF4P78317 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC19.52■□□□□ 0.72
RNF4P78317 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
RNF4P78317 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.71
RNF4P78317 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
RNF4P78317 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.71
RNF4P78317 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC19.51■□□□□ 0.71
RNF4P78317 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.51■□□□□ 0.71
RNF4P78317 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC19.51■□□□□ 0.71
RNF4P78317 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
RNF4P78317 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC19.51■□□□□ 0.71
RNF4P78317 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 AC011767.1-201ENST00000617410 1153 ntBASIC19.51■□□□□ 0.71
RNF4P78317 UBE2Q2P2-204ENST00000618775 648 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC19.51■□□□□ 0.71
RNF4P78317 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC19.51■□□□□ 0.71
RNF4P78317 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.51■□□□□ 0.71
RNF4P78317 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
RNF4P78317 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 AC061975.6-201ENST00000579045 1553 ntBASIC19.5■□□□□ 0.71
RNF4P78317 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC19.5■□□□□ 0.71
RNF4P78317 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.5■□□□□ 0.71
RNF4P78317 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
RNF4P78317 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC19.5■□□□□ 0.71
RNF4P78317 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC19.5■□□□□ 0.71
RNF4P78317 AC080038.1-201ENST00000611274 1154 ntBASIC19.5■□□□□ 0.71
RNF4P78317 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
RNF4P78317 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.49■□□□□ 0.71
RNF4P78317 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.49■□□□□ 0.71
RNF4P78317 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.49■□□□□ 0.71
RNF4P78317 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
RNF4P78317 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.49■□□□□ 0.71
RNF4P78317 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC19.49■□□□□ 0.71
RNF4P78317 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC19.49■□□□□ 0.71
RNF4P78317 SLC7A5P1-201ENST00000568957 537 ntBASIC19.49■□□□□ 0.71
RNF4P78317 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 MFSD11-216ENST00000590393 1141 ntBASIC19.49■□□□□ 0.71
RNF4P78317 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
RNF4P78317 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms