Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LIMK1P53667 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC20.91■□□□□ 0.94
LIMK1P53667 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
LIMK1P53667 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMK1P53667 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.9■□□□□ 0.94
LIMK1P53667 AL162412.1-201ENST00000567129 965 ntBASIC20.9■□□□□ 0.94
LIMK1P53667 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC20.9■□□□□ 0.94
LIMK1P53667 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC20.9■□□□□ 0.94
LIMK1P53667 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC20.9■□□□□ 0.94
LIMK1P53667 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LIMK1P53667 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC20.9■□□□□ 0.94
LIMK1P53667 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LIMK1P53667 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LIMK1P53667 EP400NL-214ENST00000641289 2402 ntBASIC20.89■□□□□ 0.94
LIMK1P53667 LINC00565-201ENST00000562710 2331 ntBASIC20.89■□□□□ 0.94
LIMK1P53667 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC20.89■□□□□ 0.94
LIMK1P53667 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
LIMK1P53667 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC20.89■□□□□ 0.93
LIMK1P53667 AC211429.1-201ENST00000415277 523 ntBASIC20.89■□□□□ 0.93
LIMK1P53667 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC20.89■□□□□ 0.93
LIMK1P53667 AC007493.2-201ENST00000568427 478 ntTSL 3 BASIC20.89■□□□□ 0.93
LIMK1P53667 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
LIMK1P53667 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LIMK1P53667 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.89■□□□□ 0.93
LIMK1P53667 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC20.89■□□□□ 0.93
LIMK1P53667 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LIMK1P53667 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LIMK1P53667 AC079630.1-202ENST00000618127 1840 ntBASIC20.88■□□□□ 0.93
LIMK1P53667 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.88■□□□□ 0.93
LIMK1P53667 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC20.88■□□□□ 0.93
LIMK1P53667 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 LINC01023-201ENST00000606054 436 ntBASIC20.88■□□□□ 0.93
LIMK1P53667 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMK1P53667 REXO1L12P-201ENST00000622156 912 ntBASIC20.88■□□□□ 0.93
LIMK1P53667 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
LIMK1P53667 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
LIMK1P53667 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
LIMK1P53667 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC20.88■□□□□ 0.93
LIMK1P53667 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC20.88■□□□□ 0.93
LIMK1P53667 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.87■□□□□ 0.93
LIMK1P53667 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
LIMK1P53667 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMK1P53667 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.87■□□□□ 0.93
LIMK1P53667 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMK1P53667 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMK1P53667 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC20.87■□□□□ 0.93
LIMK1P53667 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
LIMK1P53667 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
LIMK1P53667 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 SMIM1-201ENST00000444870 546 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC20.86■□□□□ 0.93
LIMK1P53667 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC20.86■□□□□ 0.93
LIMK1P53667 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMK1P53667 EEF1DP3-203ENST00000566025 782 ntBASIC20.86■□□□□ 0.93
LIMK1P53667 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.86■□□□□ 0.93
LIMK1P53667 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
LIMK1P53667 AC010980.2-201ENST00000587099 1412 ntBASIC20.86■□□□□ 0.93
LIMK1P53667 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 STK25-234ENST00000535007 2459 ntTSL 2 BASIC20.85■□□□□ 0.93
LIMK1P53667 DUSP8P3-201ENST00000399571 1760 ntBASIC20.85■□□□□ 0.93
LIMK1P53667 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 RAC3-201ENST00000306897 1090 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
LIMK1P53667 A3GALT2-201ENST00000442999 1023 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms