Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
VIMP08670 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC21.13■□□□□ 0.97
VIMP08670 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC21.13■□□□□ 0.97
VIMP08670 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
VIMP08670 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC21.13■□□□□ 0.97
VIMP08670 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC21.13■□□□□ 0.97
VIMP08670 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC21.13■□□□□ 0.97
VIMP08670 AC087289.5-201ENST00000586076 3175 ntBASIC21.13■□□□□ 0.97
VIMP08670 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.13■□□□□ 0.97
VIMP08670 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC21.13■□□□□ 0.97
VIMP08670 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VIMP08670 SRSF4-201ENST00000373795 2387 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.12■□□□□ 0.97
VIMP08670 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC21.12■□□□□ 0.97
VIMP08670 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VIMP08670 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VIMP08670 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.12■□□□□ 0.97
VIMP08670 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 U85056.1-201ENST00000616429 682 ntBASIC21.12■□□□□ 0.97
VIMP08670 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VIMP08670 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC21.12■□□□□ 0.97
VIMP08670 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
VIMP08670 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VIMP08670 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC21.11■□□□□ 0.97
VIMP08670 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC21.11■□□□□ 0.97
VIMP08670 IDNK-201ENST00000376417 511 ntTSL 5 BASIC21.11■□□□□ 0.97
VIMP08670 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC21.11■□□□□ 0.97
VIMP08670 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC21.11■□□□□ 0.97
VIMP08670 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC21.11■□□□□ 0.97
VIMP08670 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC21.11■□□□□ 0.97
VIMP08670 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
VIMP08670 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VIMP08670 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 AC079089.2-201ENST00000531211 1277 ntBASIC21.1■□□□□ 0.97
VIMP08670 NKILA-201ENST00000613231 537 ntTSL 4 BASIC21.1■□□□□ 0.97
VIMP08670 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC21.1■□□□□ 0.97
VIMP08670 UBE2Z-201ENST00000360943 3122 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
VIMP08670 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC21.09■□□□□ 0.97
VIMP08670 KLHL11-201ENST00000319121 2383 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VIMP08670 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
VIMP08670 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.09■□□□□ 0.97
VIMP08670 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 DUX4L18-201ENST00000553347 1267 ntBASIC21.09■□□□□ 0.97
VIMP08670 ABHD17AP5-201ENST00000580133 923 ntBASIC21.09■□□□□ 0.97
VIMP08670 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VIMP08670 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21.09■□□□□ 0.97
VIMP08670 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC21.09■□□□□ 0.97
VIMP08670 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
VIMP08670 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VIMP08670 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
VIMP08670 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.09■□□□□ 0.97
VIMP08670 AC006128.1-201ENST00000624704 1661 ntBASIC21.09■□□□□ 0.97
VIMP08670 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
VIMP08670 AC138932.1-201ENST00000534164 6830 ntBASIC21.08■□□□□ 0.97
VIMP08670 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.97
VIMP08670 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.97
VIMP08670 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.08■□□□□ 0.97
VIMP08670 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC21.08■□□□□ 0.97
VIMP08670 OR7E47P-201ENST00000546390 1422 ntBASIC21.08■□□□□ 0.97
VIMP08670 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
VIMP08670 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 23.1 ms