Protein–RNA interactions for Protein: P07949

RET, Proto-oncogene tyrosine-protein kinase receptor Ret, humanhuman

Predictions only

Length 1,114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RETP07949 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 BX276092.2-201ENST00000417668 665 ntBASIC21.3■■□□□ 1
RETP07949 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC21.3■■□□□ 1
RETP07949 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC21.3■■□□□ 1
RETP07949 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC21.3■■□□□ 1
RETP07949 AC055733.4-201ENST00000638462 1354 ntBASIC21.3■■□□□ 1
RETP07949 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 PXK-203ENST00000383715 1756 ntTSL 5 BASIC21.3■■□□□ 1
RETP07949 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
RETP07949 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.3■■□□□ 1
RETP07949 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC21.29■■□□□ 1
RETP07949 AC093787.1-201ENST00000450396 207 ntBASIC21.29■■□□□ 1
RETP07949 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.29■■□□□ 1
RETP07949 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.29■■□□□ 1
RETP07949 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC21.29■■□□□ 1
RETP07949 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RETP07949 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.29■■□□□ 1
RETP07949 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
RETP07949 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 AC127496.7-201ENST00000625110 1798 ntBASIC21.28■■□□□ 1
RETP07949 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.28■■□□□ 1
RETP07949 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC21.28■■□□□ 1
RETP07949 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC21.28■■□□□ 1
RETP07949 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.28■■□□□ 1
RETP07949 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC21.28■■□□□ 1
RETP07949 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
RETP07949 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC21.28■■□□□ 1
RETP07949 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
RETP07949 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.27■■□□□ 1
RETP07949 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RETP07949 ECEL1P1-201ENST00000373592 1742 ntBASIC21.27■■□□□ 1
RETP07949 AEBP2-204ENST00000398864 5099 ntAPPRIS P4 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC21.27■■□□□ 1
RETP07949 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 FAM213B-215ENST00000537325 1096 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
RETP07949 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.27■■□□□ 1
RETP07949 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC21.27■■□□□ 1
RETP07949 AC016405.3-201ENST00000607710 860 ntBASIC21.27■■□□□ 1
RETP07949 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.27■■□□□ 1
RETP07949 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC21.27■■□□□ 1
RETP07949 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
RETP07949 AC079630.1-202ENST00000618127 1840 ntBASIC21.27■□□□□ 0.99
RETP07949 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
RETP07949 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.26■□□□□ 0.99
RETP07949 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC21.26■□□□□ 0.99
RETP07949 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC21.26■□□□□ 0.99
RETP07949 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
RETP07949 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETP07949 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETP07949 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.25■□□□□ 0.99
RETP07949 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
RETP07949 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC21.25■□□□□ 0.99
RETP07949 AC008550.1-201ENST00000511500 884 ntBASIC21.25■□□□□ 0.99
RETP07949 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.25■□□□□ 0.99
RETP07949 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RETP07949 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
RETP07949 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.25■□□□□ 0.99
RETP07949 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
RETP07949 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
RETP07949 BET1L-207ENST00000529614 560 ntTSL 5 BASIC21.24■□□□□ 0.99
RETP07949 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms