Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.46■■□□□ 1.03
PDGFBP01127 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFBP01127 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFBP01127 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFBP01127 AC087499.1-201ENST00000418141 1075 ntBASIC21.46■■□□□ 1.03
PDGFBP01127 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC21.46■■□□□ 1.03
PDGFBP01127 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
PDGFBP01127 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.46■■□□□ 1.03
PDGFBP01127 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
PDGFBP01127 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC21.45■■□□□ 1.03
PDGFBP01127 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
PDGFBP01127 LINC00526-201ENST00000581067 1875 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.45■■□□□ 1.02
PDGFBP01127 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 AC092368.3-202ENST00000574180 1591 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.45■■□□□ 1.02
PDGFBP01127 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.45■■□□□ 1.02
PDGFBP01127 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 SOX15-203ENST00000570788 1093 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC21.45■■□□□ 1.02
PDGFBP01127 AC243732.1-201ENST00000612648 864 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.45■■□□□ 1.02
PDGFBP01127 LINC01960-201ENST00000563759 1884 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 KRT16P2-201ENST00000414673 1423 ntBASIC21.45■■□□□ 1.02
PDGFBP01127 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
PDGFBP01127 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC21.44■■□□□ 1.02
PDGFBP01127 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 AL034346.1-201ENST00000568244 1277 ntBASIC21.44■■□□□ 1.02
PDGFBP01127 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 AC233702.5-201ENST00000584107 538 ntBASIC21.44■■□□□ 1.02
PDGFBP01127 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC21.44■■□□□ 1.02
PDGFBP01127 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.44■■□□□ 1.02
PDGFBP01127 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
PDGFBP01127 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFBP01127 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC21.43■■□□□ 1.02
PDGFBP01127 S100A14-203ENST00000368701 1080 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
PDGFBP01127 RPS2P55-201ENST00000397318 883 ntBASIC21.43■■□□□ 1.02
PDGFBP01127 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFBP01127 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFBP01127 AC107956.1-201ENST00000494359 873 ntBASIC21.43■■□□□ 1.02
PDGFBP01127 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFBP01127 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFBP01127 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.43■■□□□ 1.02
PDGFBP01127 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFBP01127 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.43■■□□□ 1.02
PDGFBP01127 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFBP01127 RRNAD1-202ENST00000368218 1802 ntAPPRIS ALT2 TSL 3 BASIC21.43■■□□□ 1.02
PDGFBP01127 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.43■■□□□ 1.02
PDGFBP01127 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFBP01127 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
PDGFBP01127 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 KRT17P2-201ENST00000300992 1314 ntBASIC21.42■■□□□ 1.02
PDGFBP01127 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC21.42■■□□□ 1.02
PDGFBP01127 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC21.42■■□□□ 1.02
PDGFBP01127 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC21.42■■□□□ 1.02
PDGFBP01127 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.42■■□□□ 1.02
PDGFBP01127 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
PDGFBP01127 AC012618.2-201ENST00000428058 849 ntBASIC21.42■■□□□ 1.02
PDGFBP01127 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.42■■□□□ 1.02
PDGFBP01127 SLC29A4P2-201ENST00000504749 1089 ntBASIC21.42■■□□□ 1.02
PDGFBP01127 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.42■■□□□ 1.02
PDGFBP01127 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC21.42■■□□□ 1.02
PDGFBP01127 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC21.42■■□□□ 1.02
PDGFBP01127 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.42■■□□□ 1.02
PDGFBP01127 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFBP01127 ABCB10P4-201ENST00000566803 2184 ntBASIC21.41■■□□□ 1.02
PDGFBP01127 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFBP01127 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
PDGFBP01127 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
PDGFBP01127 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC21.41■■□□□ 1.02
PDGFBP01127 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.41■■□□□ 1.02
PDGFBP01127 KRT18P35-201ENST00000510488 1269 ntBASIC21.41■■□□□ 1.02
PDGFBP01127 PPOX-219ENST00000544598 813 ntTSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.41■■□□□ 1.02
PDGFBP01127 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.41■■□□□ 1.02
PDGFBP01127 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.4■■□□□ 1.02
PDGFBP01127 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC21.4■■□□□ 1.02
PDGFBP01127 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.4■■□□□ 1.02
PDGFBP01127 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC21.4■■□□□ 1.02
PDGFBP01127 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC21.4■■□□□ 1.02
PDGFBP01127 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms