Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 GALNS-213ENST00000569433 723 ntTSL 3 BASIC19.87■□□□□ 0.77
LDB3O75112 AC053503.5-201ENST00000601508 636 ntBASIC19.87■□□□□ 0.77
LDB3O75112 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
LDB3O75112 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LDB3O75112 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
LDB3O75112 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
LDB3O75112 TUB-203ENST00000534099 1759 ntTSL 2 BASIC19.87■□□□□ 0.77
LDB3O75112 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDB3O75112 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
LDB3O75112 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC19.86■□□□□ 0.77
LDB3O75112 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.86■□□□□ 0.77
LDB3O75112 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.86■□□□□ 0.77
LDB3O75112 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC19.86■□□□□ 0.77
LDB3O75112 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
LDB3O75112 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
LDB3O75112 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
LDB3O75112 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
LDB3O75112 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC19.85■□□□□ 0.77
LDB3O75112 LY6E-201ENST00000292494 1181 ntAPPRIS P2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.85■□□□□ 0.77
LDB3O75112 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
LDB3O75112 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC19.85■□□□□ 0.77
LDB3O75112 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.85■□□□□ 0.77
LDB3O75112 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
LDB3O75112 CLDN5-201ENST00000403084 2357 ntBASIC19.85■□□□□ 0.77
LDB3O75112 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
LDB3O75112 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
LDB3O75112 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.84■□□□□ 0.77
LDB3O75112 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LDB3O75112 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC19.84■□□□□ 0.77
LDB3O75112 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
LDB3O75112 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.84■□□□□ 0.77
LDB3O75112 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC19.84■□□□□ 0.77
LDB3O75112 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.84■□□□□ 0.77
LDB3O75112 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
LDB3O75112 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC19.84■□□□□ 0.77
LDB3O75112 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC19.84■□□□□ 0.77
LDB3O75112 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC19.83■□□□□ 0.77
LDB3O75112 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 Z98882.1-201ENST00000622160 2253 ntBASIC19.83■□□□□ 0.77
LDB3O75112 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.83■□□□□ 0.77
LDB3O75112 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC19.83■□□□□ 0.77
LDB3O75112 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC19.83■□□□□ 0.77
LDB3O75112 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.83■□□□□ 0.77
LDB3O75112 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC19.83■□□□□ 0.77
LDB3O75112 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
LDB3O75112 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.83■□□□□ 0.77
LDB3O75112 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC19.83■□□□□ 0.76
LDB3O75112 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
LDB3O75112 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.83■□□□□ 0.76
LDB3O75112 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
LDB3O75112 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
LDB3O75112 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC19.83■□□□□ 0.76
LDB3O75112 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 GXYLT1P2-201ENST00000433312 1230 ntBASIC19.82■□□□□ 0.76
LDB3O75112 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.82■□□□□ 0.76
LDB3O75112 DISC1-224ENST00000639374 1071 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
LDB3O75112 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC19.82■□□□□ 0.76
LDB3O75112 NARF-205ENST00000412079 1760 ntTSL 5 BASIC19.82■□□□□ 0.76
LDB3O75112 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
LDB3O75112 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
LDB3O75112 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC19.81■□□□□ 0.76
LDB3O75112 CCSAP-201ENST00000284617 5121 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms