Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH5O43196 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC28.25■■■□□ 2.11
MSH5O43196 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC28.25■■■□□ 2.11
MSH5O43196 AC083906.2-201ENST00000511578 360 ntBASIC28.25■■■□□ 2.11
MSH5O43196 TP53I11-215ENST00000531928 1078 ntTSL 3 BASIC28.25■■■□□ 2.11
MSH5O43196 AC142086.2-201ENST00000569753 217 ntBASIC28.25■■■□□ 2.11
MSH5O43196 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC28.25■■■□□ 2.11
MSH5O43196 AL121832.2-201ENST00000610979 668 ntBASIC28.25■■■□□ 2.11
MSH5O43196 OR10R2-202ENST00000641067 1132 ntAPPRIS ALT2 BASIC28.25■■■□□ 2.11
MSH5O43196 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH5O43196 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
MSH5O43196 OSCAR-209ENST00000616215 2016 ntAPPRIS ALT2 TSL 5 BASIC28.25■■■□□ 2.11
MSH5O43196 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
MSH5O43196 FP325331.1-202ENST00000623531 1380 ntBASIC28.24■■■□□ 2.11
MSH5O43196 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 SPATA4-201ENST00000280191 1169 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC28.24■■■□□ 2.11
MSH5O43196 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC28.24■■■□□ 2.11
MSH5O43196 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 KLF13-207ENST00000560473 489 ntTSL 3 BASIC28.24■■■□□ 2.11
MSH5O43196 MIR4651-201ENST00000582622 73 ntBASIC28.24■■■□□ 2.11
MSH5O43196 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC28.24■■■□□ 2.11
MSH5O43196 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
MSH5O43196 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC28.23■■■□□ 2.11
MSH5O43196 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC28.23■■■□□ 2.11
MSH5O43196 FAM201B-201ENST00000458407 597 ntBASIC28.23■■■□□ 2.11
MSH5O43196 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC28.23■■■□□ 2.11
MSH5O43196 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC28.23■■■□□ 2.11
MSH5O43196 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC28.23■■■□□ 2.11
MSH5O43196 AC093783.1-201ENST00000612976 329 ntBASIC28.23■■■□□ 2.11
MSH5O43196 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
MSH5O43196 SUGCT-201ENST00000335693 1645 ntAPPRIS ALT2 TSL 1 (best) BASIC28.22■■■□□ 2.11
MSH5O43196 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC28.22■■■□□ 2.11
MSH5O43196 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC28.22■■■□□ 2.11
MSH5O43196 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
MSH5O43196 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC28.22■■■□□ 2.11
MSH5O43196 AC093827.2-201ENST00000512654 315 ntBASIC28.22■■■□□ 2.11
MSH5O43196 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC28.22■■■□□ 2.11
MSH5O43196 AC115989.2-201ENST00000578640 563 ntBASIC28.22■■■□□ 2.11
MSH5O43196 CDIPT-207ENST00000566113 1671 ntTSL 2 BASIC28.22■■■□□ 2.11
MSH5O43196 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC28.22■■■□□ 2.11
MSH5O43196 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
MSH5O43196 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC28.21■■■□□ 2.11
MSH5O43196 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC28.21■■■□□ 2.11
MSH5O43196 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC28.21■■■□□ 2.11
MSH5O43196 IMMP2L-204ENST00000447215 1164 ntTSL 3 BASIC28.21■■■□□ 2.11
MSH5O43196 DET1-205ENST00000558413 583 ntTSL 4 BASIC28.21■■■□□ 2.11
MSH5O43196 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC28.21■■■□□ 2.11
MSH5O43196 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH5O43196 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
MSH5O43196 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC28.21■■■□□ 2.11
MSH5O43196 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC28.21■■■□□ 2.11
MSH5O43196 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH5O43196 IQCJ-SCHIP1-202ENST00000460298 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC28.21■■■□□ 2.11
MSH5O43196 ANOS2P-203ENST00000472227 1816 ntBASIC28.2■■■□□ 2.11
MSH5O43196 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.11
MSH5O43196 AP000568.1-201ENST00000282964 442 ntBASIC28.2■■■□□ 2.1
MSH5O43196 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH5O43196 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC28.2■■■□□ 2.1
MSH5O43196 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH5O43196 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC28.2■■■□□ 2.1
MSH5O43196 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH5O43196 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC28.2■■■□□ 2.1
MSH5O43196 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC28.2■■■□□ 2.1
MSH5O43196 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC28.2■■■□□ 2.1
MSH5O43196 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC28.2■■■□□ 2.1
MSH5O43196 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC28.2■■■□□ 2.1
MSH5O43196 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC28.2■■■□□ 2.1
MSH5O43196 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
MSH5O43196 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC28.19■■■□□ 2.1
MSH5O43196 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH5O43196 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC28.19■■■□□ 2.1
MSH5O43196 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
MSH5O43196 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC28.19■■■□□ 2.1
MSH5O43196 TSPY6P-201ENST00000448518 926 ntBASIC28.19■■■□□ 2.1
MSH5O43196 MAZ-216ENST00000616501 991 ntTSL 5 BASIC28.19■■■□□ 2.1
MSH5O43196 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC28.19■■■□□ 2.1
MSH5O43196 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC28.19■■■□□ 2.1
MSH5O43196 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
MSH5O43196 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
MSH5O43196 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
MSH5O43196 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
MSH5O43196 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
MSH5O43196 AL050303.2-201ENST00000619798 666 ntBASIC28.18■■■□□ 2.1
MSH5O43196 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
MSH5O43196 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
MSH5O43196 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC28.18■■■□□ 2.1
MSH5O43196 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC28.18■■■□□ 2.1
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms