Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC20.52■□□□□ 0.87
HDAC3O15379 AP005212.1-201ENST00000581547 1997 ntBASIC20.52■□□□□ 0.87
HDAC3O15379 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.51■□□□□ 0.87
HDAC3O15379 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HDAC3O15379 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC20.51■□□□□ 0.87
HDAC3O15379 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
HDAC3O15379 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.51■□□□□ 0.87
HDAC3O15379 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 COL15A1-205ENST00000610452 5422 ntAPPRIS ALT2 TSL 5 BASIC20.51■□□□□ 0.87
HDAC3O15379 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
HDAC3O15379 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.5■□□□□ 0.87
HDAC3O15379 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.5■□□□□ 0.87
HDAC3O15379 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC20.5■□□□□ 0.87
HDAC3O15379 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.5■□□□□ 0.87
HDAC3O15379 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.5■□□□□ 0.87
HDAC3O15379 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDAC3O15379 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.5■□□□□ 0.87
HDAC3O15379 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDAC3O15379 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.5■□□□□ 0.87
HDAC3O15379 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.5■□□□□ 0.87
HDAC3O15379 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC20.49■□□□□ 0.87
HDAC3O15379 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.49■□□□□ 0.87
HDAC3O15379 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 SRD5A1P1-201ENST00000442297 786 ntBASIC20.49■□□□□ 0.87
HDAC3O15379 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.49■□□□□ 0.87
HDAC3O15379 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
HDAC3O15379 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 AP006587.3-201ENST00000525742 1516 ntBASIC20.48■□□□□ 0.87
HDAC3O15379 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 MIR3621-201ENST00000580529 85 ntBASIC20.48■□□□□ 0.87
HDAC3O15379 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.48■□□□□ 0.87
HDAC3O15379 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 PLK5-205ENST00000642079 1969 ntBASIC20.48■□□□□ 0.87
HDAC3O15379 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.48■□□□□ 0.87
HDAC3O15379 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
HDAC3O15379 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC20.47■□□□□ 0.87
HDAC3O15379 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC20.47■□□□□ 0.87
HDAC3O15379 AC073314.1-201ENST00000568729 2216 ntBASIC20.47■□□□□ 0.87
HDAC3O15379 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.47■□□□□ 0.87
HDAC3O15379 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC20.47■□□□□ 0.87
HDAC3O15379 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.47■□□□□ 0.87
HDAC3O15379 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.47■□□□□ 0.87
HDAC3O15379 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 AP005435.1-201ENST00000529293 1178 ntBASIC20.47■□□□□ 0.87
HDAC3O15379 RASSF1-AS1-201ENST00000629828 790 ntBASIC20.47■□□□□ 0.87
HDAC3O15379 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.47■□□□□ 0.87
HDAC3O15379 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC20.47■□□□□ 0.87
HDAC3O15379 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
HDAC3O15379 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.46■□□□□ 0.87
HDAC3O15379 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.46■□□□□ 0.87
HDAC3O15379 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC20.46■□□□□ 0.87
HDAC3O15379 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
HDAC3O15379 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
HDAC3O15379 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.46■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms