Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC26.59■■□□□ 1.85
NPHP1O15259 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
NPHP1O15259 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP1O15259 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP1O15259 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC26.58■■□□□ 1.85
NPHP1O15259 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP1O15259 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC26.58■■□□□ 1.85
NPHP1O15259 SERPINH1P1-201ENST00000419794 1249 ntBASIC26.58■■□□□ 1.85
NPHP1O15259 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC26.58■■□□□ 1.85
NPHP1O15259 AL158047.1-201ENST00000445918 881 ntBASIC26.58■■□□□ 1.85
NPHP1O15259 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC26.58■■□□□ 1.85
NPHP1O15259 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP1O15259 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
NPHP1O15259 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC26.58■■□□□ 1.84
NPHP1O15259 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC26.57■■□□□ 1.84
NPHP1O15259 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC26.57■■□□□ 1.84
NPHP1O15259 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC26.57■■□□□ 1.84
NPHP1O15259 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC26.57■■□□□ 1.84
NPHP1O15259 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 AC006058.3-201ENST00000606217 1069 ntBASIC26.57■■□□□ 1.84
NPHP1O15259 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
NPHP1O15259 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC26.57■■□□□ 1.84
NPHP1O15259 AC010980.2-201ENST00000587099 1412 ntBASIC26.56■■□□□ 1.84
NPHP1O15259 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 AC098590.1-201ENST00000468126 897 ntBASIC26.56■■□□□ 1.84
NPHP1O15259 AC091874.3-201ENST00000512672 1195 ntBASIC26.56■■□□□ 1.84
NPHP1O15259 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC26.56■■□□□ 1.84
NPHP1O15259 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC26.56■■□□□ 1.84
NPHP1O15259 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC26.55■■□□□ 1.84
NPHP1O15259 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC26.55■■□□□ 1.84
NPHP1O15259 FGF8-207ENST00000618991 856 ntTSL 3 BASIC26.55■■□□□ 1.84
NPHP1O15259 KRT16P2-201ENST00000414673 1423 ntBASIC26.55■■□□□ 1.84
NPHP1O15259 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP1O15259 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP1O15259 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP1O15259 GAS7-202ENST00000396115 929 ntTSL 5 BASIC26.54■■□□□ 1.84
NPHP1O15259 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC26.54■■□□□ 1.84
NPHP1O15259 ADM-205ENST00000528544 586 ntTSL 2 BASIC26.54■■□□□ 1.84
NPHP1O15259 MYC-209ENST00000641252 345 ntBASIC26.54■■□□□ 1.84
NPHP1O15259 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP1O15259 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC26.54■■□□□ 1.84
NPHP1O15259 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC26.54■■□□□ 1.84
NPHP1O15259 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP1O15259 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP1O15259 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP1O15259 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC26.53■■□□□ 1.84
NPHP1O15259 PBX1-209ENST00000485769 834 ntTSL 2 BASIC26.53■■□□□ 1.84
NPHP1O15259 ARL16-209ENST00000573715 763 ntTSL 3 BASIC26.53■■□□□ 1.84
NPHP1O15259 ARL16-211ENST00000576135 694 ntTSL 3 BASIC26.53■■□□□ 1.84
NPHP1O15259 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP1O15259 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC26.53■■□□□ 1.84
NPHP1O15259 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC26.53■■□□□ 1.84
NPHP1O15259 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP1O15259 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP1O15259 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP1O15259 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP1O15259 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC26.52■■□□□ 1.84
NPHP1O15259 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP1O15259 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP1O15259 AC142381.4-202ENST00000563973 229 ntBASIC26.52■■□□□ 1.84
NPHP1O15259 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC26.52■■□□□ 1.84
NPHP1O15259 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 RBM17P2-201ENST00000616397 1405 ntBASIC26.52■■□□□ 1.84
NPHP1O15259 INO80E-214ENST00000620599 515 ntTSL 2 BASIC26.52■■□□□ 1.84
NPHP1O15259 ASAP2-202ENST00000315273 5582 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
NPHP1O15259 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC26.51■■□□□ 1.83
NPHP1O15259 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
NPHP1O15259 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP1O15259 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC26.51■■□□□ 1.83
NPHP1O15259 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC26.51■■□□□ 1.83
NPHP1O15259 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC26.51■■□□□ 1.83
NPHP1O15259 LSM12P1-201ENST00000411836 588 ntBASIC26.51■■□□□ 1.83
NPHP1O15259 GCSHP5-201ENST00000443090 522 ntBASIC26.51■■□□□ 1.83
NPHP1O15259 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
NPHP1O15259 OR2A1-AS1-201ENST00000462305 773 ntBASIC26.51■■□□□ 1.83
NPHP1O15259 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC26.51■■□□□ 1.83
NPHP1O15259 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC26.51■■□□□ 1.83
NPHP1O15259 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP1O15259 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC26.5■■□□□ 1.83
NPHP1O15259 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
NPHP1O15259 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC26.5■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms