Protein–RNA interactions for Protein: A6NC98

CCDC88B, Coiled-coil domain-containing protein 88B, humanhuman

Predictions only

Length 1,476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88BA6NC98 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC36.97■■■■□ 3.51
CCDC88BA6NC98 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC36.97■■■■□ 3.51
CCDC88BA6NC98 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC36.97■■■■□ 3.51
CCDC88BA6NC98 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC36.97■■■■□ 3.51
CCDC88BA6NC98 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 AC093323.1-202ENST00000635031 2045 ntBASIC36.96■■■■□ 3.51
CCDC88BA6NC98 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC36.96■■■■□ 3.51
CCDC88BA6NC98 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 AL158047.1-201ENST00000445918 881 ntBASIC36.95■■■■□ 3.51
CCDC88BA6NC98 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 AC142381.4-202ENST00000563973 229 ntBASIC36.95■■■■□ 3.51
CCDC88BA6NC98 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 CACNA2D1-203ENST00000423588 1429 ntTSL 1 (best) BASIC36.95■■■■□ 3.51
CCDC88BA6NC98 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC36.95■■■■□ 3.5
CCDC88BA6NC98 SERPINH1P1-201ENST00000419794 1249 ntBASIC36.94■■■■□ 3.5
CCDC88BA6NC98 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC36.94■■■■□ 3.5
CCDC88BA6NC98 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 GATS-209ENST00000454084 1030 ntTSL 3 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 CASP6-205ENST00000505486 538 ntTSL 4 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC36.93■■■■□ 3.5
CCDC88BA6NC98 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC36.92■■■■□ 3.5
CCDC88BA6NC98 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
CCDC88BA6NC98 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC36.92■■■■□ 3.5
CCDC88BA6NC98 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC36.92■■■■□ 3.5
CCDC88BA6NC98 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC36.92■■■■□ 3.5
CCDC88BA6NC98 FAM21FP-204ENST00000608637 956 ntBASIC36.92■■■■□ 3.5
CCDC88BA6NC98 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 KCNK4-201ENST00000394525 1673 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 FBXL8-203ENST00000518148 1054 ntTSL 2 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC36.91■■■■□ 3.5
CCDC88BA6NC98 COMT-203ENST00000403184 2217 ntTSL 2 BASIC36.9■■■■□ 3.5
CCDC88BA6NC98 LTK-203ENST00000453182 2412 ntTSL 2 BASIC36.9■■■■□ 3.5
CCDC88BA6NC98 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC36.9■■■■□ 3.5
CCDC88BA6NC98 WDR88-201ENST00000355868 1718 ntAPPRIS P2 TSL 2 BASIC36.9■■■■□ 3.5
CCDC88BA6NC98 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 CYP2T3P-201ENST00000601990 817 ntBASIC36.89■■■■□ 3.5
CCDC88BA6NC98 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC36.89■■■■□ 3.5
CCDC88BA6NC98 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC36.88■■■■□ 3.5
CCDC88BA6NC98 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 RAB11FIP1-203ENST00000522727 1866 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 USP36-216ENST00000589424 970 ntTSL 5 BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC36.88■■■■□ 3.49
CCDC88BA6NC98 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC36.87■■■■□ 3.49
CCDC88BA6NC98 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC36.87■■■■□ 3.49
CCDC88BA6NC98 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC36.87■■■■□ 3.49
CCDC88BA6NC98 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC36.87■■■■□ 3.49
CCDC88BA6NC98 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC36.87■■■■□ 3.49
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms