Protein–RNA interactions for Protein: Q9Y6N9

USH1C, Harmonin, humanhuman

Predictions only

Length 552 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH1CQ9Y6N9 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 AL049796.1-201ENST00000565336 1766 ntBASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
USH1CQ9Y6N9 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 B4GALNT1-203ENST00000449184 1633 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
USH1CQ9Y6N9 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 AL499627.2-201ENST00000606283 725 ntBASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 AL031848.2-201ENST00000607670 837 ntBASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
USH1CQ9Y6N9 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 AC079089.2-201ENST00000531211 1277 ntBASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 PGF-201ENST00000238607 1693 ntAPPRIS ALT2 TSL 3 BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 AP005212.1-201ENST00000581547 1997 ntBASIC20.96■□□□□ 0.95
USH1CQ9Y6N9 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 HCN2-201ENST00000251287 3408 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.95■□□□□ 0.94
USH1CQ9Y6N9 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 Z83844.2-201ENST00000456099 1945 ntTSL 2 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
USH1CQ9Y6N9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 ME2-216ENST00000639850 2331 ntTSL 5 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
USH1CQ9Y6N9 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms