Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 AC008667.2-201ENST00000504413 469 ntTSL 3 BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC19.2■□□□□ 0.66
SHANK1Q9Y566 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 AC069236.1-201ENST00000604339 616 ntBASIC19.19■□□□□ 0.66
SHANK1Q9Y566 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SHANK1Q9Y566 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 UNC93B4-201ENST00000505679 747 ntBASIC19.18■□□□□ 0.66
SHANK1Q9Y566 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SHANK1Q9Y566 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 AL034346.1-201ENST00000568244 1277 ntBASIC19.17■□□□□ 0.66
SHANK1Q9Y566 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 AC097658.1-201ENST00000475555 843 ntBASIC19.17■□□□□ 0.66
SHANK1Q9Y566 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
SHANK1Q9Y566 TMEM102-201ENST00000323206 1973 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 AC128676.1-201ENST00000454392 318 ntBASIC19.16■□□□□ 0.66
SHANK1Q9Y566 AP003097.1-201ENST00000530657 1135 ntBASIC19.16■□□□□ 0.66
SHANK1Q9Y566 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 AC008550.1-201ENST00000511500 884 ntBASIC19.16■□□□□ 0.66
SHANK1Q9Y566 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 AC008694.1-202ENST00000636953 945 ntBASIC19.16■□□□□ 0.66
SHANK1Q9Y566 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
SHANK1Q9Y566 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 MFSD7-203ENST00000404286 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 AC026366.1-201ENST00000488803 879 ntBASIC19.15■□□□□ 0.66
SHANK1Q9Y566 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 AL162412.1-201ENST00000567129 965 ntBASIC19.15■□□□□ 0.66
SHANK1Q9Y566 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
SHANK1Q9Y566 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC19.14■□□□□ 0.66
SHANK1Q9Y566 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
SHANK1Q9Y566 KRTAP5-8-201ENST00000398534 1183 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 ABHD1-207ENST00000621324 1078 ntTSL 5 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 SH3GLB2-202ENST00000372559 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 AC010980.2-201ENST00000587099 1412 ntBASIC19.14■□□□□ 0.65
SHANK1Q9Y566 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 AP006587.3-201ENST00000525742 1516 ntBASIC19.14■□□□□ 0.65
SHANK1Q9Y566 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC19.14■□□□□ 0.65
SHANK1Q9Y566 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms