Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
PCDH9Q9HC56 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDH9Q9HC56 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDH9Q9HC56 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
PCDH9Q9HC56 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 AC105233.4-201ENST00000642045 216 ntBASIC21.82■■□□□ 1.08
PCDH9Q9HC56 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC21.82■■□□□ 1.08
PCDH9Q9HC56 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 IRS3P-201ENST00000223076 1006 ntBASIC21.81■■□□□ 1.08
PCDH9Q9HC56 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 SMUG1P1-201ENST00000590640 811 ntBASIC21.81■■□□□ 1.08
PCDH9Q9HC56 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
PCDH9Q9HC56 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
PCDH9Q9HC56 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 AP006587.3-201ENST00000525742 1516 ntBASIC21.79■■□□□ 1.08
PCDH9Q9HC56 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
PCDH9Q9HC56 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 PARN-205ENST00000539279 1557 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 ZNRF2P3-201ENST00000424200 374 ntBASIC21.78■■□□□ 1.08
PCDH9Q9HC56 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC21.78■■□□□ 1.08
PCDH9Q9HC56 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 ZFAND2B-202ENST00000409097 1765 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
PCDH9Q9HC56 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
PCDH9Q9HC56 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 AL049796.1-201ENST00000565336 1766 ntBASIC21.76■■□□□ 1.07
PCDH9Q9HC56 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.76■■□□□ 1.07
PCDH9Q9HC56 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms