Protein–RNA interactions for Protein: Q9H6T3

RPAP3, RNA polymerase II-associated protein 3, humanhuman

Predicted RBP Predictions only

Length 665 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP3Q9H6T3 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 BX276092.2-201ENST00000417668 665 ntBASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 AC092118.2-201ENST00000613495 667 ntBASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC24.48■■□□□ 1.51
RPAP3Q9H6T3 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 RNA5SP413-201ENST00000516373 109 ntBASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 AL591742.1-201ENST00000604433 565 ntBASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 AC092053.2-201ENST00000640557 1818 ntBASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC24.47■■□□□ 1.51
RPAP3Q9H6T3 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.46■■□□□ 1.51
RPAP3Q9H6T3 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 AC243732.1-201ENST00000612648 864 ntBASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 AC066615.1-201ENST00000640911 628 ntBASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC24.45■■□□□ 1.5
RPAP3Q9H6T3 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 AL162412.1-201ENST00000567129 965 ntBASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC24.44■■□□□ 1.5
RPAP3Q9H6T3 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 AC080038.3-201ENST00000623346 1952 ntBASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.43■■□□□ 1.5
RPAP3Q9H6T3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 RARRES2P4-201ENST00000514074 484 ntBASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC24.42■■□□□ 1.5
RPAP3Q9H6T3 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 C1orf229-201ENST00000623686 2258 ntBASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 POU5F1P3-201ENST00000428824 1078 ntBASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 AC010980.2-201ENST00000587099 1412 ntBASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.41■■□□□ 1.5
RPAP3Q9H6T3 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC24.41■■□□□ 1.5
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms