Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 DACT3-202ENST00000391916 2834 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 GTF2A2-203ENST00000396061 758 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 PBX1-209ENST00000485769 834 ntTSL 2 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 CPLX1-203ENST00000505203 2011 ntTSL 2 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.65■■□□□ 1.38
UPF3AQ9H1J1 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC23.64■■□□□ 1.38
UPF3AQ9H1J1 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC23.64■■□□□ 1.38
UPF3AQ9H1J1 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC23.64■■□□□ 1.38
UPF3AQ9H1J1 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC23.64■■□□□ 1.38
UPF3AQ9H1J1 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 CD44-222ENST00000526025 1052 ntTSL 2 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 IRX5-204ENST00000560154 879 ntTSL 5 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 IRX5-205ENST00000620085 881 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 CCS-208ENST00000533244 1430 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.64■■□□□ 1.37
UPF3AQ9H1J1 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 KATNAL2-208ENST00000592005 1348 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 THAP7-201ENST00000215742 1213 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 MMAB-206ENST00000540016 945 ntTSL 3 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC23.63■■□□□ 1.37
UPF3AQ9H1J1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 AC061975.6-201ENST00000579045 1553 ntBASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 STPG4-207ENST00000445927 891 ntAPPRIS P1 TSL 5 BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 INO80E-214ENST00000620599 515 ntTSL 2 BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
UPF3AQ9H1J1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 AC139530.1-201ENST00000575312 1977 ntBASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
UPF3AQ9H1J1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 YIF1B-213ENST00000591755 1077 ntTSL 2 BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 AC006058.3-201ENST00000606217 1069 ntBASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 AC093323.1-202ENST00000635031 2045 ntBASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
UPF3AQ9H1J1 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 AC128676.1-201ENST00000454392 318 ntBASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 AC000035.1-201ENST00000634116 343 ntTSL 5 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
UPF3AQ9H1J1 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
UPF3AQ9H1J1 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
Retrieved 100 of 98,524 protein–RNA pairs in 54.3 ms