Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 AC142086.2-201ENST00000569753 217 ntBASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 AC005181.1-201ENST00000604782 1256 ntBASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 AL121832.2-201ENST00000610979 668 ntBASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
TRAIPQ9BWF2 ECEL1P1-201ENST00000373592 1742 ntBASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 CDK5-204ENST00000485972 1758 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
TRAIPQ9BWF2 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 SLC7A5P2-201ENST00000553010 536 ntBASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
TRAIPQ9BWF2 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.3
TRAIPQ9BWF2 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC23.14■■□□□ 1.3
TRAIPQ9BWF2 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 NAA20-201ENST00000310450 920 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 TSPY6P-201ENST00000448518 926 ntBASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 AC083906.2-201ENST00000511578 360 ntBASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 WT1-AS_3.1-201ENST00000613262 234 ntBASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 LSR-203ENST00000360798 1963 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 AC127496.7-201ENST00000625110 1798 ntBASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.14■■□□□ 1.29
TRAIPQ9BWF2 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 GUSBP6-202ENST00000438529 1198 ntBASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 RNF146-206ENST00000480444 843 ntTSL 2 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.13■■□□□ 1.29
TRAIPQ9BWF2 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 AC133552.2-202ENST00000575694 574 ntBASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC23.12■■□□□ 1.29
TRAIPQ9BWF2 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TRAIPQ9BWF2 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC23.11■■□□□ 1.29
TRAIPQ9BWF2 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC23.11■■□□□ 1.29
Retrieved 100 of 98,524 protein–RNA pairs in 42.1 ms