Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 RN7SL471P-201ENST00000580476 299 ntBASIC21.18■□□□□ 0.98
VPS13AQ96RL7 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC21.18■□□□□ 0.98
VPS13AQ96RL7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VPS13AQ96RL7 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 RPS2P55-201ENST00000397318 883 ntBASIC21.16■□□□□ 0.98
VPS13AQ96RL7 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 AC107956.1-201ENST00000494359 873 ntBASIC21.16■□□□□ 0.98
VPS13AQ96RL7 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 IFNAR2-204ENST00000382264 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 POU5F1P4-201ENST00000413175 1085 ntBASIC21.16■□□□□ 0.98
VPS13AQ96RL7 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VPS13AQ96RL7 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 AC133561.5-201ENST00000635547 218 ntBASIC21.15■□□□□ 0.98
VPS13AQ96RL7 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VPS13AQ96RL7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
VPS13AQ96RL7 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS13AQ96RL7 TSPY7P-201ENST00000431358 1114 ntBASIC21.14■□□□□ 0.97
VPS13AQ96RL7 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC21.14■□□□□ 0.97
VPS13AQ96RL7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS13AQ96RL7 ATP6V0E2-211ENST00000606024 893 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS13AQ96RL7 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
VPS13AQ96RL7 AL355075.4-201ENST00000554988 638 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 AC233702.5-201ENST00000584107 538 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 EEF1DP3-203ENST00000566025 782 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 CD177P1-201ENST00000606252 935 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 AL049637.2-201ENST00000641778 930 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 AC092865.7-201ENST00000641832 219 ntBASIC21.13■□□□□ 0.97
VPS13AQ96RL7 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
VPS13AQ96RL7 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 AC069544.1-201ENST00000609399 999 ntBASIC21.12■□□□□ 0.97
VPS13AQ96RL7 SNX21-213ENST00000614929 587 ntTSL 5 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 MAGI2-AS3-202ENST00000422093 762 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
VPS13AQ96RL7 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 SERPINH1P1-201ENST00000419794 1249 ntBASIC21.11■□□□□ 0.97
VPS13AQ96RL7 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 LINC01960-201ENST00000563759 1884 ntBASIC21.11■□□□□ 0.97
VPS13AQ96RL7 RBM17P2-201ENST00000616397 1405 ntBASIC21.11■□□□□ 0.97
VPS13AQ96RL7 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC21.11■□□□□ 0.97
VPS13AQ96RL7 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms