Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC20.27■□□□□ 0.84
VPS33AQ96AX1 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VPS33AQ96AX1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS33AQ96AX1 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.27■□□□□ 0.84
VPS33AQ96AX1 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS33AQ96AX1 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC20.27■□□□□ 0.83
VPS33AQ96AX1 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC20.27■□□□□ 0.83
VPS33AQ96AX1 LINC01006-201ENST00000333319 2292 ntBASIC20.27■□□□□ 0.83
VPS33AQ96AX1 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VPS33AQ96AX1 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 SRD5A1P1-201ENST00000442297 786 ntBASIC20.26■□□□□ 0.83
VPS33AQ96AX1 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VPS33AQ96AX1 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 GUSBP5-201ENST00000418136 578 ntBASIC20.25■□□□□ 0.83
VPS33AQ96AX1 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 AL049796.1-201ENST00000565336 1766 ntBASIC20.25■□□□□ 0.83
VPS33AQ96AX1 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.25■□□□□ 0.83
VPS33AQ96AX1 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 AP004607.7-201ENST00000527152 1677 ntBASIC20.24■□□□□ 0.83
VPS33AQ96AX1 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VPS33AQ96AX1 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC20.23■□□□□ 0.83
VPS33AQ96AX1 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.22■□□□□ 0.83
VPS33AQ96AX1 AL512631.2-201ENST00000604634 923 ntBASIC20.22■□□□□ 0.83
VPS33AQ96AX1 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC20.22■□□□□ 0.83
VPS33AQ96AX1 NES-201ENST00000368223 5558 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.21■□□□□ 0.83
VPS33AQ96AX1 AC092171.4-201ENST00000609130 632 ntBASIC20.21■□□□□ 0.83
VPS33AQ96AX1 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.21■□□□□ 0.83
VPS33AQ96AX1 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.8 ms