Protein–RNA interactions for Protein: Q8N1B4

VPS52, Vacuolar protein sorting-associated protein 52 homolog, humanhuman

Predictions only

Length 723 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52Q8N1B4 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.87■■□□□ 1.25
VPS52Q8N1B4 TSPY20P-201ENST00000450910 630 ntBASIC22.87■■□□□ 1.25
VPS52Q8N1B4 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.87■■□□□ 1.25
VPS52Q8N1B4 KRT18P6-201ENST00000555540 1265 ntBASIC22.87■■□□□ 1.25
VPS52Q8N1B4 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC22.87■■□□□ 1.25
VPS52Q8N1B4 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
VPS52Q8N1B4 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
VPS52Q8N1B4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 MTCL1-201ENST00000306329 5718 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 AF201337.1-201ENST00000520239 748 ntBASIC22.86■■□□□ 1.25
VPS52Q8N1B4 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.86■■□□□ 1.25
VPS52Q8N1B4 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
VPS52Q8N1B4 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 LINC00526-201ENST00000581067 1875 ntBASIC22.84■■□□□ 1.25
VPS52Q8N1B4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 RGMA-211ENST00000557420 989 ntTSL 3 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 AC105036.2-201ENST00000569468 176 ntBASIC22.84■■□□□ 1.25
VPS52Q8N1B4 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
VPS52Q8N1B4 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 AL034346.1-201ENST00000568244 1277 ntBASIC22.83■■□□□ 1.25
VPS52Q8N1B4 AC133552.2-202ENST00000575694 574 ntBASIC22.83■■□□□ 1.25
VPS52Q8N1B4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC22.83■■□□□ 1.25
VPS52Q8N1B4 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 APTR-203ENST00000430801 583 ntTSL 5 BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
VPS52Q8N1B4 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 BMP1-204ENST00000397814 836 ntTSL 4 BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 AC069152.1-201ENST00000438030 544 ntBASIC22.81■■□□□ 1.24
VPS52Q8N1B4 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
VPS52Q8N1B4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC22.8■■□□□ 1.24
VPS52Q8N1B4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 22.5 ms