Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT39Q6A163 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC22.87■■□□□ 1.25
KRT39Q6A163 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT39Q6A163 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.87■■□□□ 1.25
KRT39Q6A163 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.87■■□□□ 1.25
KRT39Q6A163 TERF1P2-201ENST00000583350 1212 ntBASIC22.87■■□□□ 1.25
KRT39Q6A163 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.87■■□□□ 1.25
KRT39Q6A163 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT39Q6A163 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC22.87■■□□□ 1.25
KRT39Q6A163 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC22.87■■□□□ 1.25
KRT39Q6A163 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC22.87■■□□□ 1.25
KRT39Q6A163 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC22.86■■□□□ 1.25
KRT39Q6A163 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC22.86■■□□□ 1.25
KRT39Q6A163 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC22.86■■□□□ 1.25
KRT39Q6A163 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT39Q6A163 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC22.86■■□□□ 1.25
KRT39Q6A163 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC22.86■■□□□ 1.25
KRT39Q6A163 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC22.86■■□□□ 1.25
KRT39Q6A163 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC22.86■■□□□ 1.25
KRT39Q6A163 EEF1DP3-203ENST00000566025 782 ntBASIC22.86■■□□□ 1.25
KRT39Q6A163 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT39Q6A163 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT39Q6A163 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT39Q6A163 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC22.86■■□□□ 1.25
KRT39Q6A163 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC22.86■■□□□ 1.25
KRT39Q6A163 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC22.86■■□□□ 1.25
KRT39Q6A163 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC22.86■■□□□ 1.25
KRT39Q6A163 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC22.85■■□□□ 1.25
KRT39Q6A163 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC22.85■■□□□ 1.25
KRT39Q6A163 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC22.85■■□□□ 1.25
KRT39Q6A163 RNF146-206ENST00000480444 843 ntTSL 2 BASIC22.85■■□□□ 1.25
KRT39Q6A163 AC053503.5-201ENST00000601508 636 ntBASIC22.85■■□□□ 1.25
KRT39Q6A163 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC22.85■■□□□ 1.25
KRT39Q6A163 KRT87P-202ENST00000534226 1464 ntBASIC22.85■■□□□ 1.25
KRT39Q6A163 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC22.85■■□□□ 1.25
KRT39Q6A163 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC22.85■■□□□ 1.25
KRT39Q6A163 AC019069.1-201ENST00000610008 1333 ntBASIC22.84■■□□□ 1.25
KRT39Q6A163 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC22.84■■□□□ 1.25
KRT39Q6A163 NARF-205ENST00000412079 1760 ntTSL 5 BASIC22.84■■□□□ 1.25
KRT39Q6A163 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.84■■□□□ 1.25
KRT39Q6A163 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 CCDC92B-201ENST00000575506 885 ntBASIC22.84■■□□□ 1.25
KRT39Q6A163 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.84■■□□□ 1.25
KRT39Q6A163 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
KRT39Q6A163 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC22.83■■□□□ 1.25
KRT39Q6A163 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
KRT39Q6A163 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
KRT39Q6A163 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
KRT39Q6A163 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
KRT39Q6A163 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.25
KRT39Q6A163 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC22.83■■□□□ 1.25
KRT39Q6A163 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC22.83■■□□□ 1.25
KRT39Q6A163 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC22.83■■□□□ 1.25
KRT39Q6A163 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC22.83■■□□□ 1.25
KRT39Q6A163 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.83■■□□□ 1.24
KRT39Q6A163 RARG-204ENST00000543726 1779 ntTSL 2 BASIC22.83■■□□□ 1.24
KRT39Q6A163 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC22.83■■□□□ 1.24
KRT39Q6A163 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
KRT39Q6A163 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.24
KRT39Q6A163 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 DYM-203ENST00000442713 2147 ntTSL 2 BASIC22.82■■□□□ 1.24
KRT39Q6A163 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC22.82■■□□□ 1.24
KRT39Q6A163 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC22.82■■□□□ 1.24
KRT39Q6A163 KRT18P14-201ENST00000534205 1250 ntBASIC22.82■■□□□ 1.24
KRT39Q6A163 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
KRT39Q6A163 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
KRT39Q6A163 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC22.82■■□□□ 1.24
KRT39Q6A163 STX5-203ENST00000394690 1568 ntTSL 5 BASIC22.81■■□□□ 1.24
KRT39Q6A163 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC22.81■■□□□ 1.24
KRT39Q6A163 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC22.81■■□□□ 1.24
KRT39Q6A163 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
KRT39Q6A163 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
KRT39Q6A163 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
KRT39Q6A163 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 LGALS9C-201ENST00000328114 1730 ntAPPRIS P2 TSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC22.8■■□□□ 1.24
KRT39Q6A163 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC22.8■■□□□ 1.24
KRT39Q6A163 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC22.8■■□□□ 1.24
KRT39Q6A163 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC22.8■■□□□ 1.24
KRT39Q6A163 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC22.8■■□□□ 1.24
KRT39Q6A163 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms