Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 MED17-221ENST00000639724 2317 ntTSL 5 BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 COL23A1-201ENST00000390654 3061 ntAPPRIS P2 TSL 5 BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.23■■□□□ 1.31
CCDC40Q4G0X9 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 AL031432.3-201ENST00000607698 485 ntBASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 RALB-208ENST00000631312 311 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 SLC25A24-204ENST00000569674 2357 ntBASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC23.22■■□□□ 1.31
CCDC40Q4G0X9 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 AL139246.5-201ENST00000606645 996 ntBASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 AL136967.2-201ENST00000623968 743 ntBASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC23.21■■□□□ 1.31
CCDC40Q4G0X9 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC23.2■■□□□ 1.31
CCDC40Q4G0X9 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 CECR2-202ENST00000342247 6178 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 AC009237.3-201ENST00000393279 1427 ntBASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 MIR572-201ENST00000384983 95 ntBASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC23.2■■□□□ 1.3
CCDC40Q4G0X9 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 MFF-208ENST00000409616 1247 ntTSL 5 BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC23.19■■□□□ 1.3
CCDC40Q4G0X9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 EBPL-204ENST00000378272 766 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC23.18■■□□□ 1.3
CCDC40Q4G0X9 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC23.17■■□□□ 1.3
CCDC40Q4G0X9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 SUDS3P1-201ENST00000505831 966 ntBASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC23.16■■□□□ 1.3
CCDC40Q4G0X9 BX005040.4-201ENST00000637145 1518 ntBASIC23.16■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms