Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.3■□□□□ 0.84
COL28A1Q2UY09 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 CAPN10-203ENST00000352879 862 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 GXYLT1P3-201ENST00000453058 1193 ntBASIC20.29■□□□□ 0.84
COL28A1Q2UY09 CFL1-211ENST00000531407 1062 ntTSL 2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 AP001160.3-201ENST00000601484 763 ntBASIC20.29■□□□□ 0.84
COL28A1Q2UY09 AC083880.1-201ENST00000608266 535 ntBASIC20.29■□□□□ 0.84
COL28A1Q2UY09 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL28A1Q2UY09 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 NKX3-2-201ENST00000382438 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 TERF2-201ENST00000254942 2983 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 GAS7-202ENST00000396115 929 ntTSL 5 BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 KRT18P21-201ENST00000515767 1272 ntBASIC20.28■□□□□ 0.84
COL28A1Q2UY09 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 AC010536.3-201ENST00000620306 533 ntBASIC20.28■□□□□ 0.84
COL28A1Q2UY09 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL28A1Q2UY09 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL28A1Q2UY09 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL28A1Q2UY09 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL28A1Q2UY09 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.83
COL28A1Q2UY09 MME-217ENST00000616757 1315 ntTSL 5 BASIC20.27■□□□□ 0.83
COL28A1Q2UY09 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL28A1Q2UY09 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 AC105935.2-201ENST00000435478 544 ntTSL 4 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC20.25■□□□□ 0.83
COL28A1Q2UY09 GRTP1-203ENST00000375431 1384 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 OSCAR-201ENST00000284648 2055 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 CYP2T1P-201ENST00000432607 1285 ntBASIC20.24■□□□□ 0.83
COL28A1Q2UY09 UBE2SP1-201ENST00000450587 669 ntBASIC20.24■□□□□ 0.83
COL28A1Q2UY09 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 REXO1L12P-201ENST00000622156 912 ntBASIC20.24■□□□□ 0.83
COL28A1Q2UY09 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC20.24■□□□□ 0.83
COL28A1Q2UY09 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 AL024507.2-201ENST00000606070 2574 ntBASIC20.23■□□□□ 0.83
COL28A1Q2UY09 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 BET1L-204ENST00000410108 637 ntTSL 3 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC20.23■□□□□ 0.83
COL28A1Q2UY09 AC097658.1-201ENST00000475555 843 ntBASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms