Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 PARN-205ENST00000539279 1557 ntTSL 2 BASIC20.48■□□□□ 0.87
FOXA1P55317 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.48■□□□□ 0.87
FOXA1P55317 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 AC233992.3-201ENST00000607491 485 ntBASIC20.48■□□□□ 0.87
FOXA1P55317 AL136162.1-201ENST00000607711 1078 ntBASIC20.48■□□□□ 0.87
FOXA1P55317 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.48■□□□□ 0.87
FOXA1P55317 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.48■□□□□ 0.87
FOXA1P55317 SEC22C-207ENST00000423701 1458 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
FOXA1P55317 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA1P55317 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA1P55317 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA1P55317 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.47■□□□□ 0.87
FOXA1P55317 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.47■□□□□ 0.87
FOXA1P55317 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA1P55317 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA1P55317 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA1P55317 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC20.47■□□□□ 0.87
FOXA1P55317 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA1P55317 PKD1P6-201ENST00000343738 4769 ntBASIC20.47■□□□□ 0.87
FOXA1P55317 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
FOXA1P55317 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC20.46■□□□□ 0.87
FOXA1P55317 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
FOXA1P55317 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 SQLE-206ENST00000523430 1879 ntTSL 2 BASIC20.46■□□□□ 0.87
FOXA1P55317 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.46■□□□□ 0.87
FOXA1P55317 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC20.46■□□□□ 0.87
FOXA1P55317 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC20.46■□□□□ 0.87
FOXA1P55317 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.46■□□□□ 0.87
FOXA1P55317 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
FOXA1P55317 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.87
FOXA1P55317 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.87
FOXA1P55317 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.87
FOXA1P55317 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
FOXA1P55317 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC20.45■□□□□ 0.86
FOXA1P55317 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.45■□□□□ 0.86
FOXA1P55317 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC20.45■□□□□ 0.86
FOXA1P55317 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC20.45■□□□□ 0.86
FOXA1P55317 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC20.45■□□□□ 0.86
FOXA1P55317 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
FOXA1P55317 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.45■□□□□ 0.86
FOXA1P55317 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.44■□□□□ 0.86
FOXA1P55317 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC20.44■□□□□ 0.86
FOXA1P55317 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.44■□□□□ 0.86
FOXA1P55317 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.44■□□□□ 0.86
FOXA1P55317 AC126544.1-201ENST00000580842 1059 ntBASIC20.44■□□□□ 0.86
FOXA1P55317 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.44■□□□□ 0.86
FOXA1P55317 AC131212.1-201ENST00000613771 668 ntBASIC20.44■□□□□ 0.86
FOXA1P55317 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 AC135279.3-201ENST00000610945 1311 ntBASIC20.44■□□□□ 0.86
FOXA1P55317 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
FOXA1P55317 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
FOXA1P55317 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.43■□□□□ 0.86
FOXA1P55317 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC20.43■□□□□ 0.86
FOXA1P55317 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.43■□□□□ 0.86
FOXA1P55317 IGHV3-19-201ENST00000521488 291 ntBASIC20.43■□□□□ 0.86
FOXA1P55317 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC20.43■□□□□ 0.86
FOXA1P55317 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 NARF-205ENST00000412079 1760 ntTSL 5 BASIC20.43■□□□□ 0.86
FOXA1P55317 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
FOXA1P55317 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
FOXA1P55317 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC20.42■□□□□ 0.86
FOXA1P55317 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.42■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 20.7 ms