Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN3P51790 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC23.34■■□□□ 1.33
CLCN3P51790 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN3P51790 APTR-203ENST00000430801 583 ntTSL 5 BASIC23.34■■□□□ 1.33
CLCN3P51790 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC23.34■■□□□ 1.33
CLCN3P51790 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC23.34■■□□□ 1.33
CLCN3P51790 GAMT-205ENST00000640762 751 ntTSL 5 BASIC23.34■■□□□ 1.33
CLCN3P51790 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN3P51790 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN3P51790 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC23.33■■□□□ 1.33
CLCN3P51790 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN3P51790 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC23.33■■□□□ 1.33
CLCN3P51790 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
CLCN3P51790 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC23.33■■□□□ 1.33
CLCN3P51790 METTL15-202ENST00000403099 795 ntTSL 5 BASIC23.33■■□□□ 1.33
CLCN3P51790 POU5F1P4-201ENST00000413175 1085 ntBASIC23.33■■□□□ 1.33
CLCN3P51790 AC120498.10-201ENST00000621827 505 ntBASIC23.33■■□□□ 1.33
CLCN3P51790 AC013268.1-206ENST00000638368 961 ntBASIC23.33■■□□□ 1.33
CLCN3P51790 AC112229.1-201ENST00000639295 961 ntBASIC23.33■■□□□ 1.33
CLCN3P51790 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC23.33■■□□□ 1.32
CLCN3P51790 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLCN3P51790 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC23.32■■□□□ 1.32
CLCN3P51790 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC23.32■■□□□ 1.32
CLCN3P51790 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC23.32■■□□□ 1.32
CLCN3P51790 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.32■■□□□ 1.32
CLCN3P51790 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLCN3P51790 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CLCN3P51790 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC23.32■■□□□ 1.32
CLCN3P51790 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC23.32■■□□□ 1.32
CLCN3P51790 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.32■■□□□ 1.32
CLCN3P51790 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.32■■□□□ 1.32
CLCN3P51790 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC23.31■■□□□ 1.32
CLCN3P51790 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC23.31■■□□□ 1.32
CLCN3P51790 GUSBP6-202ENST00000438529 1198 ntBASIC23.31■■□□□ 1.32
CLCN3P51790 AC233723.2-201ENST00000623798 2106 ntBASIC23.31■■□□□ 1.32
CLCN3P51790 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC23.31■■□□□ 1.32
CLCN3P51790 AC068473.5-201ENST00000616428 2072 ntBASIC23.31■■□□□ 1.32
CLCN3P51790 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC23.3■■□□□ 1.32
CLCN3P51790 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC23.3■■□□□ 1.32
CLCN3P51790 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 TSPY6P-201ENST00000448518 926 ntBASIC23.3■■□□□ 1.32
CLCN3P51790 CAMTA1-216ENST00000557126 486 ntTSL 2 BASIC23.3■■□□□ 1.32
CLCN3P51790 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC23.3■■□□□ 1.32
CLCN3P51790 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC23.3■■□□□ 1.32
CLCN3P51790 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC23.3■■□□□ 1.32
CLCN3P51790 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.29■■□□□ 1.32
CLCN3P51790 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC23.29■■□□□ 1.32
CLCN3P51790 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC23.29■■□□□ 1.32
CLCN3P51790 OAS3-207ENST00000551007 998 ntTSL 2 BASIC23.29■■□□□ 1.32
CLCN3P51790 AC068338.2-201ENST00000563278 1430 ntBASIC23.29■■□□□ 1.32
CLCN3P51790 PLLP-204ENST00000569059 665 ntTSL 3 BASIC23.29■■□□□ 1.32
CLCN3P51790 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC23.29■■□□□ 1.32
CLCN3P51790 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.29■■□□□ 1.32
CLCN3P51790 GUSBP5-202ENST00000510805 1989 ntBASIC23.29■■□□□ 1.32
CLCN3P51790 CCDC74A-201ENST00000295171 1543 ntAPPRIS P3 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 CCDC74B-201ENST00000310463 1549 ntAPPRIS P3 TSL 2 BASIC23.28■■□□□ 1.32
CLCN3P51790 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC23.28■■□□□ 1.32
CLCN3P51790 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC23.28■■□□□ 1.32
CLCN3P51790 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC23.28■■□□□ 1.32
CLCN3P51790 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC23.28■■□□□ 1.32
CLCN3P51790 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC23.28■■□□□ 1.32
CLCN3P51790 KRT16P2-201ENST00000414673 1423 ntBASIC23.28■■□□□ 1.32
CLCN3P51790 CYP2T1P-201ENST00000432607 1285 ntBASIC23.28■■□□□ 1.32
CLCN3P51790 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC23.28■■□□□ 1.32
CLCN3P51790 FGF8-207ENST00000618991 856 ntTSL 3 BASIC23.28■■□□□ 1.32
CLCN3P51790 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC23.28■■□□□ 1.32
CLCN3P51790 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.28■■□□□ 1.32
CLCN3P51790 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 AC242852.2-201ENST00000615738 1807 ntBASIC23.27■■□□□ 1.32
CLCN3P51790 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC23.27■■□□□ 1.32
CLCN3P51790 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC23.27■■□□□ 1.32
CLCN3P51790 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC23.27■■□□□ 1.32
CLCN3P51790 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC23.27■■□□□ 1.32
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms