Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX2P48431 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.56■□□□□ 0.56
SOX2P48431 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
SOX2P48431 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX2P48431 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 MTMR14-206ENST00000420925 1427 ntAPPRIS ALT2 TSL 2 BASIC18.56■□□□□ 0.56
SOX2P48431 LINC01006-201ENST00000333319 2292 ntBASIC18.56■□□□□ 0.56
SOX2P48431 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC18.56■□□□□ 0.56
SOX2P48431 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.56■□□□□ 0.56
SOX2P48431 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 SNUPN-201ENST00000308588 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 AC010141.3-201ENST00000456659 717 ntBASIC18.55■□□□□ 0.56
SOX2P48431 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
SOX2P48431 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
SOX2P48431 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
SOX2P48431 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC18.55■□□□□ 0.56
SOX2P48431 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC18.54■□□□□ 0.56
SOX2P48431 OR2I1P-207ENST00000453522 948 ntBASIC18.54■□□□□ 0.56
SOX2P48431 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.54■□□□□ 0.56
SOX2P48431 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC18.54■□□□□ 0.56
SOX2P48431 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
SOX2P48431 OXCT2P1-201ENST00000447263 1535 ntBASIC18.54■□□□□ 0.56
SOX2P48431 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC18.53■□□□□ 0.56
SOX2P48431 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX2P48431 AC010525.1-201ENST00000585559 441 ntBASIC18.53■□□□□ 0.56
SOX2P48431 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC18.53■□□□□ 0.56
SOX2P48431 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.53■□□□□ 0.56
SOX2P48431 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
SOX2P48431 AL049796.1-201ENST00000565336 1766 ntBASIC18.53■□□□□ 0.56
SOX2P48431 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX2P48431 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC18.52■□□□□ 0.56
SOX2P48431 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.56
SOX2P48431 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX2P48431 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX2P48431 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC18.52■□□□□ 0.56
SOX2P48431 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SOX2P48431 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC18.52■□□□□ 0.56
SOX2P48431 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.52■□□□□ 0.56
SOX2P48431 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SOX2P48431 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX2P48431 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.52■□□□□ 0.55
SOX2P48431 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
SOX2P48431 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC18.52■□□□□ 0.55
SOX2P48431 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
SOX2P48431 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX2P48431 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.51■□□□□ 0.55
SOX2P48431 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
SOX2P48431 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC18.51■□□□□ 0.55
SOX2P48431 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
SOX2P48431 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.51■□□□□ 0.55
SOX2P48431 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 AL356740.2-201ENST00000601559 647 ntBASIC18.51■□□□□ 0.55
SOX2P48431 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 RHOBTB2-201ENST00000251822 5451 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
SOX2P48431 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC18.51■□□□□ 0.55
SOX2P48431 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX2P48431 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX2P48431 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC18.5■□□□□ 0.55
SOX2P48431 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
SOX2P48431 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms