Protein–RNA interactions for Protein: O75631

UPK3A, Uroplakin-3a, humanhuman

Predictions only

Length 287 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3AO75631 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 AF106564.1-201ENST00000607058 2553 ntBASIC18.92■□□□□ 0.62
UPK3AO75631 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC18.92■□□□□ 0.62
UPK3AO75631 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
UPK3AO75631 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.91■□□□□ 0.62
UPK3AO75631 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.91■□□□□ 0.62
UPK3AO75631 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC18.91■□□□□ 0.62
UPK3AO75631 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC18.91■□□□□ 0.62
UPK3AO75631 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.91■□□□□ 0.62
UPK3AO75631 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 AP006587.3-201ENST00000525742 1516 ntBASIC18.91■□□□□ 0.62
UPK3AO75631 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.91■□□□□ 0.62
UPK3AO75631 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
UPK3AO75631 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 YBX1P1-201ENST00000445822 960 ntBASIC18.91■□□□□ 0.62
UPK3AO75631 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC18.91■□□□□ 0.62
UPK3AO75631 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC18.91■□□□□ 0.62
UPK3AO75631 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
UPK3AO75631 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.91■□□□□ 0.62
UPK3AO75631 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
UPK3AO75631 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC18.9■□□□□ 0.62
UPK3AO75631 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
UPK3AO75631 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.9■□□□□ 0.62
UPK3AO75631 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC18.9■□□□□ 0.62
UPK3AO75631 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC18.9■□□□□ 0.62
UPK3AO75631 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC18.9■□□□□ 0.62
UPK3AO75631 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
UPK3AO75631 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC18.9■□□□□ 0.62
UPK3AO75631 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
UPK3AO75631 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
UPK3AO75631 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
UPK3AO75631 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.89■□□□□ 0.61
UPK3AO75631 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
UPK3AO75631 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.61
UPK3AO75631 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
UPK3AO75631 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.89■□□□□ 0.61
UPK3AO75631 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.89■□□□□ 0.61
UPK3AO75631 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC18.89■□□□□ 0.61
UPK3AO75631 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UPK3AO75631 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
UPK3AO75631 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.89■□□□□ 0.61
UPK3AO75631 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
UPK3AO75631 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
UPK3AO75631 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
UPK3AO75631 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.88■□□□□ 0.61
UPK3AO75631 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UPK3AO75631 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.88■□□□□ 0.61
UPK3AO75631 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UPK3AO75631 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.88■□□□□ 0.61
UPK3AO75631 AC123595.1-201ENST00000440769 1046 ntBASIC18.88■□□□□ 0.61
UPK3AO75631 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
UPK3AO75631 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.88■□□□□ 0.61
UPK3AO75631 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC18.88■□□□□ 0.61
UPK3AO75631 AC055733.4-201ENST00000638462 1354 ntBASIC18.88■□□□□ 0.61
UPK3AO75631 LINC02228-203ENST00000641970 1355 ntBASIC18.88■□□□□ 0.61
UPK3AO75631 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
UPK3AO75631 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.88■□□□□ 0.61
UPK3AO75631 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC18.88■□□□□ 0.61
UPK3AO75631 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC18.88■□□□□ 0.61
UPK3AO75631 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
UPK3AO75631 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
UPK3AO75631 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC18.88■□□□□ 0.61
UPK3AO75631 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
UPK3AO75631 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
UPK3AO75631 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.87■□□□□ 0.61
UPK3AO75631 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.87■□□□□ 0.61
UPK3AO75631 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
UPK3AO75631 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
UPK3AO75631 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms