Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC30.26■■■□□ 2.43
NPHP4O75161 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC30.26■■■□□ 2.43
NPHP4O75161 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC30.26■■■□□ 2.43
NPHP4O75161 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
NPHP4O75161 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC30.25■■■□□ 2.43
NPHP4O75161 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 LRRC26-201ENST00000371542 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC30.25■■■□□ 2.43
NPHP4O75161 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC30.25■■■□□ 2.43
NPHP4O75161 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC30.25■■■□□ 2.43
NPHP4O75161 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC30.25■■■□□ 2.43
NPHP4O75161 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC30.25■■■□□ 2.43
NPHP4O75161 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
NPHP4O75161 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP4O75161 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP4O75161 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
NPHP4O75161 RCN1P1-201ENST00000400413 996 ntBASIC30.24■■■□□ 2.43
NPHP4O75161 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP4O75161 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP4O75161 REXO2-216ENST00000544196 452 ntTSL 3 BASIC30.24■■■□□ 2.43
NPHP4O75161 TK2-213ENST00000563369 882 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP4O75161 AC233702.5-201ENST00000584107 538 ntBASIC30.24■■■□□ 2.43
NPHP4O75161 IMPA2-208ENST00000589238 923 ntTSL 3 BASIC30.24■■■□□ 2.43
NPHP4O75161 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC30.24■■■□□ 2.43
NPHP4O75161 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC30.24■■■□□ 2.43
NPHP4O75161 MED17-227ENST00000640521 2047 ntTSL 5 BASIC30.24■■■□□ 2.43
NPHP4O75161 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP4O75161 LYPD1-201ENST00000345008 1033 ntTSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP4O75161 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP4O75161 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP4O75161 HAGHL-213ENST00000564545 663 ntTSL 3 BASIC30.23■■■□□ 2.43
NPHP4O75161 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC30.23■■■□□ 2.43
NPHP4O75161 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC30.23■■■□□ 2.43
NPHP4O75161 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
NPHP4O75161 TSPY7P-201ENST00000431358 1114 ntBASIC30.22■■■□□ 2.43
NPHP4O75161 TSPY1-202ENST00000451548 1160 ntAPPRIS P5 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC30.22■■■□□ 2.43
NPHP4O75161 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 TTBK2-207ENST00000567840 1961 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 LINC01960-201ENST00000563759 1884 ntBASIC30.22■■■□□ 2.43
NPHP4O75161 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 TBC1D10A-201ENST00000215790 2077 ntAPPRIS P3 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
NPHP4O75161 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC30.22■■■□□ 2.43
NPHP4O75161 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC30.21■■■□□ 2.43
NPHP4O75161 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP4O75161 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC30.21■■■□□ 2.43
NPHP4O75161 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP4O75161 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC30.21■■■□□ 2.43
NPHP4O75161 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC30.21■■■□□ 2.43
NPHP4O75161 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC30.21■■■□□ 2.43
NPHP4O75161 SLC29A4P2-201ENST00000504749 1089 ntBASIC30.21■■■□□ 2.43
NPHP4O75161 AL445228.2-201ENST00000605589 952 ntBASIC30.21■■■□□ 2.43
NPHP4O75161 ACYP2-207ENST00000606082 713 ntTSL 5 BASIC30.21■■■□□ 2.43
NPHP4O75161 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC30.21■■■□□ 2.43
NPHP4O75161 AC092368.3-202ENST00000574180 1591 ntBASIC30.2■■■□□ 2.43
NPHP4O75161 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
NPHP4O75161 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC30.2■■■□□ 2.42
NPHP4O75161 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NPHP4O75161 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NPHP4O75161 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC30.2■■■□□ 2.42
NPHP4O75161 AC087499.1-201ENST00000418141 1075 ntBASIC30.2■■■□□ 2.42
NPHP4O75161 C20orf166-AS1-202ENST00000436101 761 ntTSL 5 BASIC30.2■■■□□ 2.42
NPHP4O75161 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC30.2■■■□□ 2.42
NPHP4O75161 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC30.2■■■□□ 2.42
NPHP4O75161 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
NPHP4O75161 SOX15-203ENST00000570788 1093 ntBASIC30.2■■■□□ 2.42
NPHP4O75161 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC30.2■■■□□ 2.42
NPHP4O75161 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP4O75161 LINC00526-201ENST00000581067 1875 ntBASIC30.19■■■□□ 2.42
NPHP4O75161 SELENOS-203ENST00000526049 1188 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP4O75161 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP4O75161 AC012306.2-201ENST00000609350 630 ntBASIC30.19■■■□□ 2.42
NPHP4O75161 AC133561.5-201ENST00000635547 218 ntBASIC30.19■■■□□ 2.42
NPHP4O75161 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP4O75161 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
NPHP4O75161 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC30.18■■■□□ 2.42
NPHP4O75161 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP4O75161 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP4O75161 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP4O75161 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP4O75161 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP4O75161 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP4O75161 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP4O75161 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC30.18■■■□□ 2.42
NPHP4O75161 PPOX-219ENST00000544598 813 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP4O75161 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC30.18■■■□□ 2.42
NPHP4O75161 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC30.18■■■□□ 2.42
NPHP4O75161 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC30.18■■■□□ 2.42
NPHP4O75161 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms