Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 AC069236.1-201ENST00000604339 616 ntBASIC20.72■□□□□ 0.91
SDC3O75056 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.72■□□□□ 0.91
SDC3O75056 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC3O75056 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC3O75056 NUDT8-202ENST00000376693 728 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
SDC3O75056 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC20.71■□□□□ 0.91
SDC3O75056 PPP1R14BP2-201ENST00000426284 444 ntBASIC20.71■□□□□ 0.91
SDC3O75056 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC3O75056 JADE2-211ENST00000612830 1251 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 OR10C1-204ENST00000622521 1039 ntBASIC20.71■□□□□ 0.91
SDC3O75056 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.71■□□□□ 0.91
SDC3O75056 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
SDC3O75056 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC20.71■□□□□ 0.91
SDC3O75056 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SDC3O75056 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC20.7■□□□□ 0.9
SDC3O75056 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC20.7■□□□□ 0.9
SDC3O75056 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.7■□□□□ 0.9
SDC3O75056 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC20.7■□□□□ 0.9
SDC3O75056 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.7■□□□□ 0.9
SDC3O75056 TMEM176B-203ENST00000434545 1303 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC20.7■□□□□ 0.9
SDC3O75056 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SDC3O75056 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SDC3O75056 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC20.69■□□□□ 0.9
SDC3O75056 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC20.69■□□□□ 0.9
SDC3O75056 POU5F1P4-201ENST00000413175 1085 ntBASIC20.69■□□□□ 0.9
SDC3O75056 BX276092.2-201ENST00000417668 665 ntBASIC20.69■□□□□ 0.9
SDC3O75056 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC20.69■□□□□ 0.9
SDC3O75056 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.69■□□□□ 0.9
SDC3O75056 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC20.69■□□□□ 0.9
SDC3O75056 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.69■□□□□ 0.9
SDC3O75056 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
SDC3O75056 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC20.68■□□□□ 0.9
SDC3O75056 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 RNPS1-201ENST00000301730 1276 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SDC3O75056 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
SDC3O75056 WIPF1-207ENST00000410117 777 ntTSL 3 BASIC20.68■□□□□ 0.9
SDC3O75056 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC20.68■□□□□ 0.9
SDC3O75056 AC105001.1-201ENST00000506149 821 ntTSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC20.68■□□□□ 0.9
SDC3O75056 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC20.68■□□□□ 0.9
SDC3O75056 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.68■□□□□ 0.9
SDC3O75056 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC20.68■□□□□ 0.9
SDC3O75056 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
SDC3O75056 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.68■□□□□ 0.9
SDC3O75056 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.68■□□□□ 0.9
SDC3O75056 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
SDC3O75056 AC061975.6-201ENST00000579045 1553 ntBASIC20.68■□□□□ 0.9
SDC3O75056 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.68■□□□□ 0.9
SDC3O75056 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 ID4-201ENST00000378700 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 AC133561.1-201ENST00000568600 2415 ntBASIC20.67■□□□□ 0.9
SDC3O75056 RARG-204ENST00000543726 1779 ntTSL 2 BASIC20.67■□□□□ 0.9
SDC3O75056 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC20.67■□□□□ 0.9
SDC3O75056 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC20.67■□□□□ 0.9
SDC3O75056 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC20.67■□□□□ 0.9
SDC3O75056 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.67■□□□□ 0.9
SDC3O75056 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
SDC3O75056 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
SDC3O75056 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC3O75056 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC3O75056 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC20.66■□□□□ 0.9
SDC3O75056 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC20.66■□□□□ 0.9
SDC3O75056 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.66■□□□□ 0.9
SDC3O75056 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 28.8 ms