Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1BO60663 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC18.55■□□□□ 0.56
LMX1BO60663 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LMX1BO60663 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
LMX1BO60663 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC18.55■□□□□ 0.56
LMX1BO60663 CTNNAL1-202ENST00000374593 761 ntTSL 3 BASIC18.55■□□□□ 0.56
LMX1BO60663 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC18.55■□□□□ 0.56
LMX1BO60663 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC18.55■□□□□ 0.56
LMX1BO60663 RAB43-208ENST00000615093 783 ntTSL 5 BASIC18.55■□□□□ 0.56
LMX1BO60663 AL358852.1-201ENST00000623174 1268 ntBASIC18.55■□□□□ 0.56
LMX1BO60663 AC068587.7-201ENST00000641602 218 ntBASIC18.55■□□□□ 0.56
LMX1BO60663 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1BO60663 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1BO60663 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LMX1BO60663 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
LMX1BO60663 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1BO60663 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
LMX1BO60663 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC18.54■□□□□ 0.56
LMX1BO60663 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC18.54■□□□□ 0.56
LMX1BO60663 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 MFF-203ENST00000349901 1716 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
LMX1BO60663 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.54■□□□□ 0.56
LMX1BO60663 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LMX1BO60663 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 PKD1P6-201ENST00000343738 4769 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
LMX1BO60663 GLI4-210ENST00000523522 1297 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC18.53■□□□□ 0.56
LMX1BO60663 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC18.53■□□□□ 0.56
LMX1BO60663 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L2-201ENST00000561772 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L6-201ENST00000626483 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L1-201ENST00000627662 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L8-201ENST00000629013 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L3-201ENST00000630187 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L7-201ENST00000630678 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 DUX4L5-201ENST00000630834 1275 ntBASIC18.53■□□□□ 0.56
LMX1BO60663 PALM-202ENST00000338448 2725 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.53■□□□□ 0.56
LMX1BO60663 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
LMX1BO60663 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.53■□□□□ 0.56
LMX1BO60663 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC18.53■□□□□ 0.56
LMX1BO60663 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.52■□□□□ 0.56
LMX1BO60663 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.52■□□□□ 0.56
LMX1BO60663 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.52■□□□□ 0.56
LMX1BO60663 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.52■□□□□ 0.56
LMX1BO60663 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
LMX1BO60663 AC123595.1-201ENST00000440769 1046 ntBASIC18.52■□□□□ 0.56
LMX1BO60663 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC18.52■□□□□ 0.56
LMX1BO60663 AC087239.1-201ENST00000622671 572 ntBASIC18.52■□□□□ 0.56
LMX1BO60663 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 OXCT2P1-201ENST00000447263 1535 ntBASIC18.52■□□□□ 0.56
LMX1BO60663 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
LMX1BO60663 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LMX1BO60663 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LMX1BO60663 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
LMX1BO60663 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.55
LMX1BO60663 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.55
LMX1BO60663 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
LMX1BO60663 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LMX1BO60663 CYB561D2-205ENST00000425346 1319 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC18.51■□□□□ 0.55
LMX1BO60663 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
LMX1BO60663 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 AC027612.3-201ENST00000413684 1047 ntBASIC18.51■□□□□ 0.55
LMX1BO60663 AC019068.1-201ENST00000415226 552 ntTSL 4 BASIC18.51■□□□□ 0.55
LMX1BO60663 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
LMX1BO60663 DYM-203ENST00000442713 2147 ntTSL 2 BASIC18.51■□□□□ 0.55
LMX1BO60663 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.51■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms