Protein–RNA interactions for Protein: O60508

CDC40, Pre-mRNA-processing factor 17, humanhuman

Known RBP eCLIP

Length 579 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDC40O60508 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.332e-8■□□□□ 9.5
CDC40O60508 DHRS2-209ENST00000557535 927 ntTSL 515.79■□□□□ 0.122e-8■□□□□ 9.5
CDC40O60508 DHRS2-208ENST00000556729 5318 ntTSL 215.51■□□□□ 0.072e-8■□□□□ 9.5
CDC40O60508 DHRS2-204ENST00000553600 844 ntTSL 213.3□□□□□ -0.282e-8■□□□□ 9.5
CDC40O60508 ROCK2-201ENST00000261535 1795 ntTSL 520.29■□□□□ 0.842e-7■□□□□ 9.5
CDC40O60508 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.762e-7■□□□□ 9.5
CDC40O60508 ACAP3-210ENST00000478065 2393 ntTSL 317.66■□□□□ 0.422e-7■□□□□ 9.5
CDC40O60508 CABIN1-208ENST00000467937 593 ntTSL 317.04■□□□□ 0.322e-7■□□□□ 9.5
CDC40O60508 ACAP3-212ENST00000492936 5319 ntTSL 1 (best)16.9■□□□□ 0.32e-7■□□□□ 9.5
CDC40O60508 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC16.73■□□□□ 0.272e-7■□□□□ 9.5
CDC40O60508 ABCC6-207ENST00000577103 1381 ntTSL 514.82□□□□□ -0.042e-7■□□□□ 9.5
CDC40O60508 CABIN1-201ENST00000263119 7222 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.482e-7■□□□□ 9.5
CDC40O60508 CABIN1-203ENST00000398319 7480 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.522e-7■□□□□ 9.5
CDC40O60508 CABIN1-204ENST00000405822 6952 ntAPPRIS ALT2 TSL 1 (best) BASIC11.4□□□□□ -0.582e-7■□□□□ 9.5
CDC40O60508 CABIN1-214ENST00000617531 7072 ntAPPRIS ALT2 TSL 5 BASIC10.84□□□□□ -0.672e-7■□□□□ 9.5
CDC40O60508 AMPD2-208ENST00000469039 513 ntTSL 410.74□□□□□ -0.692e-7■□□□□ 9.5
CDC40O60508 SON-217ENST00000478183 1818 ntTSL 1 (best)8.68□□□□□ -1.022e-7■□□□□ 9.5
CDC40O60508 SON-207ENST00000436227 5269 ntAPPRIS P1 TSL 58.01□□□□□ -1.132e-7■□□□□ 9.5
CDC40O60508 SON-209ENST00000457208 765 ntTSL 36.83□□□□□ -1.322e-7■□□□□ 9.5
CDC40O60508 SON-213ENST00000473102 575 ntTSL 56.76□□□□□ -1.332e-7■□□□□ 9.5
CDC40O60508 SON-218ENST00000484294 500 ntTSL 56.76□□□□□ -1.332e-7■□□□□ 9.5
CDC40O60508 SON-210ENST00000465834 957 ntTSL 36.45□□□□□ -1.382e-7■□□□□ 9.5
CDC40O60508 SON-212ENST00000470533 798 ntTSL 54.9□□□□□ -1.632e-7■□□□□ 9.5
CDC40O60508 SON-211ENST00000467616 676 ntTSL 54.74□□□□□ -1.652e-7■□□□□ 9.5
CDC40O60508 SON-219ENST00000491794 995 ntTSL 24.64□□□□□ -1.672e-7■□□□□ 9.5
CDC40O60508 ROCK2-206ENST00000462366 563 ntTSL 33.02□□□□□ -1.932e-7■□□□□ 9.5
CDC40O60508 SON-216ENST00000477419 771 ntTSL 22.68□□□□□ -1.982e-7■□□□□ 9.5
CDC40O60508 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC23.77■■□□□ 1.43e-6■□□□□ 9.5
CDC40O60508 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.093e-6■□□□□ 9.5
CDC40O60508 EIF4G2-207ENST00000525995 592 ntTSL 419.87■□□□□ 0.773e-6■□□□□ 9.5
CDC40O60508 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC19.59■□□□□ 0.733e-6■□□□□ 9.5
CDC40O60508 EIF4G2-203ENST00000524932 1286 ntTSL 519.24■□□□□ 0.673e-6■□□□□ 9.5
CDC40O60508 SQSTM1-215ENST00000514093 842 ntTSL 519.1■□□□□ 0.653e-6■□□□□ 9.5
CDC40O60508 NFKBIA-202ENST00000553342 212 ntTSL 518.92■□□□□ 0.623e-6■□□□□ 9.5
CDC40O60508 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC18.78■□□□□ 0.63e-6■□□□□ 9.5
CDC40O60508 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.583e-6■□□□□ 9.5
CDC40O60508 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.25■□□□□ 0.513e-6■□□□□ 9.5
CDC40O60508 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC17.72■□□□□ 0.433e-6■□□□□ 9.5
CDC40O60508 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.43e-6■□□□□ 9.5
CDC40O60508 NFKBIA-205ENST00000555629 599 ntTSL 217.32■□□□□ 0.363e-6■□□□□ 9.5
CDC40O60508 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.33e-6■□□□□ 9.5
CDC40O60508 SQSTM1-204ENST00000453046 572 ntTSL 416.68■□□□□ 0.263e-6■□□□□ 9.5
CDC40O60508 SQSTM1-209ENST00000504627 602 ntTSL 516.68■□□□□ 0.263e-6■□□□□ 9.5
CDC40O60508 SQSTM1-212ENST00000508284 578 ntTSL 416.68■□□□□ 0.263e-6■□□□□ 9.5
CDC40O60508 FOXN3-204ENST00000553840 555 ntTSL 416.42■□□□□ 0.223e-6■□□□□ 9.5
CDC40O60508 NFKBIA-207ENST00000557100 825 ntTSL 316.29■□□□□ 0.23e-6■□□□□ 9.5
CDC40O60508 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.133e-6■□□□□ 9.5
CDC40O60508 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.073e-6■□□□□ 9.5
CDC40O60508 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.044e-10■□□□□ 9.5
CDC40O60508 MAPK8IP3-207ENST00000564098 4436 ntTSL 214.59□□□□□ -0.073e-6■□□□□ 9.5
CDC40O60508 EIF4G2-228ENST00000534246 523 ntTSL 214.54□□□□□ -0.083e-6■□□□□ 9.5
CDC40O60508 NFKBIA-210ENST00000557459 780 ntTSL 214.53□□□□□ -0.083e-6■□□□□ 9.5
CDC40O60508 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.41□□□□□ -0.13e-6■□□□□ 9.5
CDC40O60508 EIF4G2-210ENST00000527419 571 ntTSL 514.2□□□□□ -0.143e-6■□□□□ 9.5
CDC40O60508 MAPK8IP3-203ENST00000561765 2374 ntTSL 1 (best)14.1□□□□□ -0.153e-6■□□□□ 9.5
CDC40O60508 NFKBIA-203ENST00000554001 1396 ntTSL 513.68□□□□□ -0.223e-6■□□□□ 9.5
CDC40O60508 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC13.59□□□□□ -0.233e-6■□□□□ 9.5
CDC40O60508 NREP-220ENST00000513100 557 ntTSL 413.55□□□□□ -0.243e-6■□□□□ 9.5
CDC40O60508 MAPK8IP3-213ENST00000568271 752 ntTSL 513.4□□□□□ -0.263e-6■□□□□ 9.5
CDC40O60508 SQSTM1-205ENST00000464493 532 ntTSL 413.27□□□□□ -0.293e-6■□□□□ 9.5
CDC40O60508 EIF4G2-216ENST00000530702 563 ntTSL 212.59□□□□□ -0.393e-6■□□□□ 9.5
CDC40O60508 FOXN3-219ENST00000615335 2421 ntAPPRIS P3 TSL 1 (best) BASIC11.47□□□□□ -0.573e-6■□□□□ 9.5
CDC40O60508 FOXN3-201ENST00000261302 2542 ntAPPRIS ALT1 TSL 5 BASIC11.39□□□□□ -0.593e-6■□□□□ 9.5
CDC40O60508 NFKBIA-208ENST00000557140 1400 ntTSL 5 BASIC11.27□□□□□ -0.63e-6■□□□□ 9.5
CDC40O60508 SQSTM1-207ENST00000481335 562 ntTSL 411.23□□□□□ -0.613e-6■□□□□ 9.5
CDC40O60508 NREP-218ENST00000509427 587 ntAPPRIS P1 TSL 3 BASIC10.99□□□□□ -0.653e-6■□□□□ 9.5
CDC40O60508 SQSTM1-203ENST00000422245 628 ntTSL 410.73□□□□□ -0.693e-6■□□□□ 9.5
CDC40O60508 NREP-208ENST00000453526 559 ntAPPRIS P1 TSL 4 BASIC10.38□□□□□ -0.753e-6■□□□□ 9.5
CDC40O60508 EIF4G2-214ENST00000530211 591 ntTSL 210.34□□□□□ -0.753e-6■□□□□ 9.5
CDC40O60508 EIF4G2-221ENST00000532082 1069 ntTSL 1 (best)10.29□□□□□ -0.763e-6■□□□□ 9.5
CDC40O60508 NREP-205ENST00000446294 2065 ntAPPRIS P1 TSL 2 BASIC9.92□□□□□ -0.823e-6■□□□□ 9.5
CDC40O60508 NREP-212ENST00000505864 701 ntTSL 39.83□□□□□ -0.843e-6■□□□□ 9.5
CDC40O60508 NREP-215ENST00000508161 475 ntTSL 39.83□□□□□ -0.843e-6■□□□□ 9.5
CDC40O60508 EIF4G2-219ENST00000531507 591 ntTSL 59.67□□□□□ -0.863e-6■□□□□ 9.5
CDC40O60508 NREP-201ENST00000257435 2013 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.873e-6■□□□□ 9.5
CDC40O60508 NREP-213ENST00000507032 311 ntTSL 59.53□□□□□ -0.883e-6■□□□□ 9.5
CDC40O60508 EIF4G2-226ENST00000532570 573 ntTSL 59.36□□□□□ -0.913e-6■□□□□ 9.5
CDC40O60508 EIF4G2-201ENST00000339995 3978 ntAPPRIS ALT2 TSL 1 (best) BASIC8.86□□□□□ -0.993e-6■□□□□ 9.5
CDC40O60508 NREP-203ENST00000395634 1468 ntTSL 2 BASIC8.77□□□□□ -1.013e-6■□□□□ 9.5
CDC40O60508 FOXN3-202ENST00000345097 7832 ntAPPRIS ALT1 TSL 1 (best) BASIC8.64□□□□□ -1.033e-6■□□□□ 9.5
CDC40O60508 NREP-219ENST00000509979 771 ntTSL 4 BASIC8.15□□□□□ -1.13e-6■□□□□ 9.5
CDC40O60508 EIF4G2-202ENST00000396525 3346 ntAPPRIS ALT2 TSL 5 BASIC7.3□□□□□ -1.243e-6■□□□□ 9.5
CDC40O60508 BCLAF1-223ENST00000628517 2512 ntTSL 5 BASIC7.22□□□□□ -1.253e-6■□□□□ 9.5
CDC40O60508 BCLAF1-216ENST00000532384 3237 ntTSL 56.87□□□□□ -1.313e-6■□□□□ 9.5
CDC40O60508 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.58□□□□□ -1.363e-6■□□□□ 9.5
CDC40O60508 NREP-217ENST00000509025 987 ntTSL 3 BASIC6.32□□□□□ -1.43e-6■□□□□ 9.5
CDC40O60508 NREP-223ENST00000515855 801 ntTSL 4 BASIC6.32□□□□□ -1.43e-6■□□□□ 9.5
CDC40O60508 EIF4G2-206ENST00000525972 584 ntTSL 25.99□□□□□ -1.453e-6■□□□□ 9.5
CDC40O60508 NREP-222ENST00000514515 3564 ntTSL 1 (best)5.76□□□□□ -1.493e-6■□□□□ 9.5
CDC40O60508 FOXN3-218ENST00000557718 398 ntTSL 55.36□□□□□ -1.553e-6■□□□□ 9.5
CDC40O60508 PAK2-202ENST00000426668 689 ntTSL 35.24□□□□□ -1.574e-10■□□□□ 9.5
CDC40O60508 BCLAF1-201ENST00000353331 7110 ntTSL 5 BASIC5.05□□□□□ -1.63e-6■□□□□ 9.5
CDC40O60508 NREP-211ENST00000504018 653 ntTSL 1 (best)4.44□□□□□ -1.73e-6■□□□□ 9.5
CDC40O60508 BCLAF1-207ENST00000527759 4373 ntAPPRIS ALT2 TSL 1 (best) BASIC4.31□□□□□ -1.723e-6■□□□□ 9.5
CDC40O60508 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC4.21□□□□□ -1.743e-6■□□□□ 9.5
CDC40O60508 BCLAF1-211ENST00000529917 1336 ntTSL 1 (best)3.95□□□□□ -1.783e-6■□□□□ 9.5
CDC40O60508 BCLAF1-219ENST00000534269 4239 ntTSL 1 (best)3.82□□□□□ -1.83e-6■□□□□ 9.5
CDC40O60508 EIF4G2-212ENST00000528562 601 ntTSL 43.72□□□□□ -1.813e-6■□□□□ 9.5
CDC40O60508 FOXN3-210ENST00000555658 648 ntTSL 33.69□□□□□ -1.823e-6■□□□□ 9.5
CDC40O60508 FOXN3-206ENST00000554005 450 ntTSL 53.63□□□□□ -1.833e-6■□□□□ 9.5
Retrieved 100 of 5,364 protein–RNA pairs in 221.9 ms