Protein–RNA interactions for Protein: O14529

CUX2, Homeobox protein cut-like 2, humanhuman

Predictions only

Length 1,486 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2O14529 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC36.74■■■■□ 3.47
CUX2O14529 LSM12P1-201ENST00000411836 588 ntBASIC36.74■■■■□ 3.47
CUX2O14529 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC36.74■■■■□ 3.47
CUX2O14529 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC36.74■■■■□ 3.47
CUX2O14529 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC36.74■■■■□ 3.47
CUX2O14529 P4HB-223ENST00000576390 439 ntTSL 4 BASIC36.74■■■■□ 3.47
CUX2O14529 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC36.73■■■■□ 3.47
CUX2O14529 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC36.73■■■■□ 3.47
CUX2O14529 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 KCNIP2-206ENST00000356640 1989 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC36.73■■■■□ 3.47
CUX2O14529 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC36.73■■■■□ 3.47
CUX2O14529 AL121894.2-201ENST00000602977 491 ntBASIC36.73■■■■□ 3.47
CUX2O14529 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC36.73■■■■□ 3.47
CUX2O14529 ENTPD4-201ENST00000356206 2097 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 CCND3-203ENST00000372991 2085 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 ENTPD4-203ENST00000417069 2063 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC36.73■■■■□ 3.47
CUX2O14529 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC36.72■■■■□ 3.47
CUX2O14529 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC36.72■■■■□ 3.47
CUX2O14529 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC36.72■■■■□ 3.47
CUX2O14529 NPDC1-202ENST00000371601 1494 ntAPPRIS P2 TSL 1 (best) BASIC36.72■■■■□ 3.47
CUX2O14529 MED17-227ENST00000640521 2047 ntTSL 5 BASIC36.72■■■■□ 3.47
CUX2O14529 AC068473.1-201ENST00000317008 1111 ntTSL 2 BASIC36.71■■■■□ 3.47
CUX2O14529 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC36.71■■■■□ 3.47
CUX2O14529 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC36.71■■■■□ 3.47
CUX2O14529 USF2-205ENST00000594064 1179 ntTSL 2 BASIC36.71■■■■□ 3.47
CUX2O14529 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC36.71■■■■□ 3.47
CUX2O14529 CLDN5-204ENST00000618236 1374 ntAPPRIS P1 BASIC36.71■■■■□ 3.47
CUX2O14529 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC36.71■■■■□ 3.47
CUX2O14529 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC36.71■■■■□ 3.47
CUX2O14529 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC36.7■■■■□ 3.47
CUX2O14529 AL807752.2-201ENST00000435463 301 ntTSL 3 BASIC36.7■■■■□ 3.47
CUX2O14529 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC36.7■■■■□ 3.47
CUX2O14529 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC36.7■■■■□ 3.47
CUX2O14529 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC36.7■■■■□ 3.47
CUX2O14529 AC142381.3-201ENST00000568208 1670 ntBASIC36.7■■■■□ 3.47
CUX2O14529 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC36.7■■■■□ 3.47
CUX2O14529 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC36.7■■■■□ 3.47
CUX2O14529 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC36.7■■■■□ 3.47
CUX2O14529 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC36.69■■■■□ 3.46
CUX2O14529 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC36.69■■■■□ 3.46
CUX2O14529 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC36.69■■■■□ 3.46
CUX2O14529 EEF1DP3-203ENST00000566025 782 ntBASIC36.69■■■■□ 3.46
CUX2O14529 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
CUX2O14529 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC36.68■■■■□ 3.46
CUX2O14529 TSEN34-201ENST00000302937 2294 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
CUX2O14529 GAR1-201ENST00000226796 1224 ntAPPRIS P1 TSL 1 (best) BASIC36.68■■■■□ 3.46
CUX2O14529 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC36.68■■■■□ 3.46
CUX2O14529 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC36.68■■■■□ 3.46
CUX2O14529 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC36.67■■■■□ 3.46
CUX2O14529 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC36.67■■■■□ 3.46
CUX2O14529 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC36.67■■■■□ 3.46
CUX2O14529 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC36.67■■■■□ 3.46
CUX2O14529 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC36.67■■■■□ 3.46
CUX2O14529 USP45-205ENST00000472914 1617 ntTSL 5 BASIC36.66■■■■□ 3.46
CUX2O14529 FXN-202ENST00000396364 980 ntTSL 5 BASIC36.66■■■■□ 3.46
CUX2O14529 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC36.66■■■■□ 3.46
CUX2O14529 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC36.66■■■■□ 3.46
CUX2O14529 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC36.66■■■■□ 3.46
CUX2O14529 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC36.66■■■■□ 3.46
CUX2O14529 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC36.66■■■■□ 3.46
CUX2O14529 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC36.66■■■■□ 3.46
CUX2O14529 EED-207ENST00000528180 1745 ntTSL 5 BASIC36.65■■■■□ 3.46
CUX2O14529 AL135905.2-201ENST00000584934 1404 ntBASIC36.65■■■■□ 3.46
CUX2O14529 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC36.65■■■■□ 3.46
CUX2O14529 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC36.65■■■■□ 3.46
CUX2O14529 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC36.65■■■■□ 3.46
CUX2O14529 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC36.65■■■■□ 3.46
CUX2O14529 KRT17P1-201ENST00000399211 1546 ntBASIC36.65■■■■□ 3.46
CUX2O14529 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC36.65■■■■□ 3.46
CUX2O14529 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC36.65■■■■□ 3.46
CUX2O14529 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC36.64■■■■□ 3.46
CUX2O14529 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
CUX2O14529 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
CUX2O14529 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC36.64■■■■□ 3.46
CUX2O14529 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC36.64■■■■□ 3.46
CUX2O14529 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC36.63■■■■□ 3.45
CUX2O14529 PHB2-207ENST00000542912 1138 ntTSL 5 BASIC36.63■■■■□ 3.45
CUX2O14529 AL591742.1-201ENST00000604433 565 ntBASIC36.63■■■■□ 3.45
CUX2O14529 PPP1R14A-202ENST00000347262 637 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC36.62■■■■□ 3.45
CUX2O14529 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC36.62■■■■□ 3.45
CUX2O14529 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC36.62■■■■□ 3.45
CUX2O14529 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC36.62■■■■□ 3.45
CUX2O14529 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 CHCHD10-202ENST00000484558 1171 ntTSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 DDRGK1-201ENST00000354488 1306 ntAPPRIS P1 TSL 1 (best) BASIC36.62■■■■□ 3.45
CUX2O14529 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC36.62■■■■□ 3.45
Retrieved 100 of 98,524 protein–RNA pairs in 138.6 ms