Protein–RNA interactions for Protein: A0A0B4J263

TRAV39, T-cell receptor alpha variable 39 (Fragment), humanhuman

Predictions only

Length 110 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV39A0A0B4J263 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 AP001330.3-201ENST00000520123 633 ntBASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 SEPT5-209ENST00000438754 2241 ntTSL 2 BASIC17.7■□□□□ 0.42
TRAV39A0A0B4J263 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 AL121603.2-201ENST00000557373 2117 ntBASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 TESC-201ENST00000335209 1041 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 AF213884.3-201ENST00000563833 479 ntBASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
TRAV39A0A0B4J263 SAV1-201ENST00000324679 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 AP006587.3-201ENST00000525742 1516 ntBASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 HSD17B1-202ENST00000585807 4982 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
TRAV39A0A0B4J263 MED17-221ENST00000639724 2317 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 AC027682.1-201ENST00000562846 899 ntBASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC17.67■□□□□ 0.42
TRAV39A0A0B4J263 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 AC105233.4-201ENST00000642045 216 ntBASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
TRAV39A0A0B4J263 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 EDA-201ENST00000338901 1233 ntBASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 AL355001.2-201ENST00000620617 1191 ntBASIC17.65■□□□□ 0.42
TRAV39A0A0B4J263 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC17.65■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 49.2 ms