Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 USP39-204ENST00000409766 2033 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 TMEM235-201ENST00000374946 2409 ntTSL 5 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
TRAV1-1A0A0B4J248 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 FGFRL1-203ENST00000504138 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 THA1P-201ENST00000590384 1145 ntBASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
TRAV1-1A0A0B4J248 OR7E47P-201ENST00000546390 1422 ntBASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
TRAV1-1A0A0B4J248 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
TRAV1-1A0A0B4J248 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV1-1A0A0B4J248 AGAP5-203ENST00000581191 2779 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.23
TRAV1-1A0A0B4J248 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV1-1A0A0B4J248 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC16.52■□□□□ 0.23
TRAV1-1A0A0B4J248 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
TRAV1-1A0A0B4J248 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 EI24-211ENST00000534546 1544 ntTSL 2 BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 KRT18P24-201ENST00000344739 1156 ntBASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 SNX5-217ENST00000606557 1087 ntBASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
TRAV1-1A0A0B4J248 DDX59-201ENST00000331314 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 GPC5-201ENST00000377067 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 ABHD17AP4-201ENST00000411545 909 ntBASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 MTX2-204ENST00000443241 799 ntTSL 3 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
TRAV1-1A0A0B4J248 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms