Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC245100.8-202ENST00000629247 1058 ntBASIC19.27■□□□□ 0.68
DDX28Q9NUL7 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
DDX28Q9NUL7 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC19.27■□□□□ 0.68
DDX28Q9NUL7 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
DDX28Q9NUL7 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC19.27■□□□□ 0.68
DDX28Q9NUL7 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
DDX28Q9NUL7 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
DDX28Q9NUL7 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC19.27■□□□□ 0.67
DDX28Q9NUL7 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.67
DDX28Q9NUL7 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 AC080038.3-201ENST00000623346 1952 ntBASIC19.26■□□□□ 0.67
DDX28Q9NUL7 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 MIR3621-201ENST00000580529 85 ntBASIC19.26■□□□□ 0.67
DDX28Q9NUL7 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.26■□□□□ 0.67
DDX28Q9NUL7 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 OBSL1-203ENST00000373876 5503 ntTSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 LINC01960-201ENST00000563759 1884 ntBASIC19.25■□□□□ 0.67
DDX28Q9NUL7 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 PEMT-206ENST00000435340 960 ntTSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 AL356740.2-201ENST00000601559 647 ntBASIC19.25■□□□□ 0.67
DDX28Q9NUL7 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 AC092053.2-201ENST00000640557 1818 ntBASIC19.25■□□□□ 0.67
DDX28Q9NUL7 AC004687.1-201ENST00000579003 1625 ntBASIC19.25■□□□□ 0.67
DDX28Q9NUL7 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
DDX28Q9NUL7 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DDX28Q9NUL7 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DDX28Q9NUL7 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 LRRK1-208ENST00000532029 1241 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 PTP4A3-204ENST00000521578 1717 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
DDX28Q9NUL7 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 GTSE1-AS1-202ENST00000623117 1518 ntBASIC19.21■□□□□ 0.67
DDX28Q9NUL7 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 LYSMD4-210ENST00000545021 2431 ntTSL 4 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
Retrieved 100 of 98,524 protein–RNA pairs in 17.7 ms