Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 C1orf229-201ENST00000623686 2258 ntBASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 TMEM218-201ENST00000279968 1034 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 KRT18P6-201ENST00000555540 1265 ntBASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 KLF13-207ENST00000560473 489 ntTSL 3 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC21.2■□□□□ 0.98
TM9SF3Q9HD45 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 TSPY20P-201ENST00000450910 630 ntBASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 AF201337.1-201ENST00000520239 748 ntBASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 PAQR4-205ENST00000576565 842 ntTSL 2 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.19■□□□□ 0.98
TM9SF3Q9HD45 LINC00565-201ENST00000562710 2331 ntBASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 BHLHA15-201ENST00000314018 706 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 AL034346.1-201ENST00000568244 1277 ntBASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 LINC00526-201ENST00000581067 1875 ntBASIC21.18■□□□□ 0.98
TM9SF3Q9HD45 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 APTR-203ENST00000430801 583 ntTSL 5 BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 AC105036.2-201ENST00000569468 176 ntBASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 AC133552.2-202ENST00000575694 574 ntBASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
TM9SF3Q9HD45 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 RGMA-211ENST00000557420 989 ntTSL 3 BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 IL15RA-221ENST00000620865 1037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 IL15RA-222ENST00000622442 1160 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
TM9SF3Q9HD45 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 AC069152.1-201ENST00000438030 544 ntBASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
TM9SF3Q9HD45 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms