Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 AC137767.1-201ENST00000602918 1920 ntBASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC23.74■■□□□ 1.39
UPF3AQ9H1J1 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 AC097658.1-201ENST00000475555 843 ntBASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 ADM-205ENST00000528544 586 ntTSL 2 BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 AC243732.1-201ENST00000612648 864 ntBASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC23.73■■□□□ 1.39
UPF3AQ9H1J1 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 AC098590.1-201ENST00000468126 897 ntBASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 AC091874.3-201ENST00000512672 1195 ntBASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 AL591742.1-201ENST00000604433 565 ntBASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 AC010980.2-201ENST00000587099 1412 ntBASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC23.72■■□□□ 1.39
UPF3AQ9H1J1 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 C16orf74-201ENST00000284245 906 ntAPPRIS P2 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 NAA20-202ENST00000334982 1260 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 RPS2P52-201ENST00000469610 820 ntBASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 CRIP2-202ENST00000483017 1176 ntTSL 2 BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 ISCU-212ENST00000547005 795 ntTSL 3 BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 AC138028.5-201ENST00000566114 558 ntTSL 5 BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC23.71■■□□□ 1.39
UPF3AQ9H1J1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
UPF3AQ9H1J1 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC23.7■■□□□ 1.39
UPF3AQ9H1J1 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
UPF3AQ9H1J1 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.39
UPF3AQ9H1J1 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 GPS2-201ENST00000380728 1379 ntAPPRIS P1 TSL 1 (best) BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 AC087742.1-201ENST00000575880 1738 ntBASIC23.7■■□□□ 1.38
UPF3AQ9H1J1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 ESRRAP1-201ENST00000400596 1257 ntBASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 BET1L-207ENST00000529614 560 ntTSL 5 BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 AC093762.2-201ENST00000641700 291 ntAPPRIS P1 BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.69■■□□□ 1.38
UPF3AQ9H1J1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 DUSP5P2-201ENST00000426873 1033 ntBASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
UPF3AQ9H1J1 GCA-201ENST00000233612 1694 ntTSL 2 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 TRPT1-201ENST00000317459 962 ntAPPRIS P3 TSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 GAS7-202ENST00000396115 929 ntTSL 5 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 GCSHP5-201ENST00000443090 522 ntBASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 PLEKHJ1-205ENST00000587394 937 ntTSL 2 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
UPF3AQ9H1J1 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC23.66■■□□□ 1.38
UPF3AQ9H1J1 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC23.66■■□□□ 1.38
Retrieved 100 of 98,524 protein–RNA pairs in 42 ms