Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 pRNA.13-201ENST00000619112 90 ntBASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CCDC28BQ9BUN5 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 AC087239.1-201ENST00000622671 572 ntBASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CCDC28BQ9BUN5 DVL1-204ENST00000610709 2268 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 CDC14B-203ENST00000375242 2965 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 ENHO-201ENST00000399775 1082 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CCDC28BQ9BUN5 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC20.58■□□□□ 0.88
CCDC28BQ9BUN5 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 AL034346.1-201ENST00000568244 1277 ntBASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CCDC28BQ9BUN5 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 AC006455.2-201ENST00000429931 906 ntBASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 OR2I1P-207ENST00000453522 948 ntBASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 AC010141.3-201ENST00000456659 717 ntBASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CCDC28BQ9BUN5 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 NIPA2-205ENST00000539711 1412 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 FAM173A-207ENST00000569529 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC20.55■□□□□ 0.88
CCDC28BQ9BUN5 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC20.54■□□□□ 0.88
CCDC28BQ9BUN5 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms